1. Experiments
  2. DNase-seq
  3. Homo sapiens
  4. HT-29

Experiment summary for ENCSR814KRX

doi:10.17989/ENCSR814KRX

Summary

Status
released
Assay
DNase-seq
Biosample summary
Homo sapiens HT-29
Biosample Type
cell line
Replication type
isogenic
Description
DNase-seq on immortalized cell line HT-29, epithelial cells from a 44 year old female adult human colon with a colorectal adenocarcinoma.
Nucleic acid type
DNA

Attribution

ENCODE3 project
Lab
John Stamatoyannopoulos, UW
Award
U54HG007010 (John Stamatoyannopoulos, UW)
Project
ENCODE
External resources
Date submitted
September 26, 2014
Date released
October 14, 2015
Annotation (gkmsvm-model)
Annotation (ChromBPNet-model)
Tags
Search for all Experiment with internal tag RegulomeDB_1_0Search for all Experiment with internal tag ccre_inputv2Search for all Experiment with internal tag RegulomeDB_2_0Search for all Experiment with internal tag RegulomeDB_2_1Search for all Experiment with internal tag ccre_inputv1Search for all Experiment with internal tag ENCYCLOPEDIAv2Search for all Experiment with internal tag ENCYCLOPEDIAv1Search for all Experiment with internal tag RegulomeDB_2_2

Encyclopedia Integration

Isogenic replicates

Isogenic replicate
Technical replicate
Summary
Biosample
Library
11Homo sapiens HT-29 cell lineENCBS914HXHENCLB387UAW
21Homo sapiens HT-29 cell lineENCBS668UDTENCLB540APO
41Homo sapiens HT-29 cell lineENCBS814TLBENCLB728WAE
31Homo sapiens HT-29 cell lineENCBS836FPIENCLB903LVF

Files

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File format
Output type
Replicates

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