Experiment summary for ENCSR000EMI
doi:10.17989/ENCSR000EMI
Summary
- Status
- released
- Assay
- DNase-seq
- Biosample summary
- Homo sapiens Caco-2
- Biosample Type
- cell line
- Replication type
- isogenic
- Description
- DNase-seq on human Caco-2
- Nucleic acid type
- DNA
- Fragmentation methods
- see document
Attribution
ENCODE2 project
- Lab
- John Stamatoyannopoulos, UW
- Award
- U54HG004592 (John Stamatoyannopoulos, UW)
- Project
- ENCODE
- External resources
- References
- Date submitted
- December 16, 2010
- Date released
- December 16, 2010
- Annotation (gkmsvm-model)
- Annotation (ChromBPNet-model)
- Submitter comment
- Fastq file ENCFF001CQX contains reads of mixed lengths. Read lengths followed by respective number of reads: (28, 25875368), (36, 41473868)
- Registry of cCREs
Encyclopedia Integration
Isogenic replicates
Isogenic replicate | Technical replicate | Summary | Biosample | Library |
---|---|---|---|---|
2 | 1 | Homo sapiens Caco-2 cell line | ENCBS890JZY | ENCLB423ZZZ |
1 | 1 | Homo sapiens Caco-2 cell line | ENCBS391ENC | ENCLB422ZZZ |