Stem cell differentiation – ENCODE

H9 Stem Cells

Data generated for cell types differentiated from the H9 human embryonic stem cell line.

Endoderm

Mesoderm

Ectoderm

Stem

Mesoderm + Ectoderm

Assay

Biosample

	Histone and Mint ChIP-seq Histone and Mint ChIP-seq																													ChIA-PET ChIA-PET			TF ChIP-seq TF ChIP-seq
	H3K27me3 target for Histone and Mint ChIP-seq Assay	H3K36me3 target for Histone and Mint ChIP-seq Assay	H3K4me1 target for Histone and Mint ChIP-seq Assay	H3K4me3 target for Histone and Mint ChIP-seq Assay	H3K9me3 target for Histone and Mint ChIP-seq Assay	H2AFZ target for Histone and Mint ChIP-seq Assay	H2AK5ac target for Histone and Mint ChIP-seq Assay	H2BK120ac target for Histone and Mint ChIP-seq Assay	H2BK12ac target for Histone and Mint ChIP-seq Assay	H2BK15ac target for Histone and Mint ChIP-seq Assay	H2BK20ac target for Histone and Mint ChIP-seq Assay	H2BK5ac target for Histone and Mint ChIP-seq Assay	H3K14ac target for Histone and Mint ChIP-seq Assay	H3K18ac target for Histone and Mint ChIP-seq Assay	H3K23ac target for Histone and Mint ChIP-seq Assay	H3K23me2 target for Histone and Mint ChIP-seq Assay	H3K27ac target for Histone and Mint ChIP-seq Assay	H3K4ac target for Histone and Mint ChIP-seq Assay	H3K4me2 target for Histone and Mint ChIP-seq Assay	H3K56ac target for Histone and Mint ChIP-seq Assay	H3K79me1 target for Histone and Mint ChIP-seq Assay	H3K79me2 target for Histone and Mint ChIP-seq Assay	H3K9ac target for Histone and Mint ChIP-seq Assay	H3T11ph target for Histone and Mint ChIP-seq Assay	H4K20me1 target for Histone and Mint ChIP-seq Assay	H4K5ac target for Histone and Mint ChIP-seq Assay	H4K8ac target for Histone and Mint ChIP-seq Assay	H4K91ac target for Histone and Mint ChIP-seq Assay	DNase-seq Assay	RAD21 target for ChIA-PET Assay	RNA microarray Assay	Repli-chip Assay	CTCF target for TF ChIP-seq Assay	WGBS Assay	long read RNA-seq Assay	microRNA-seq Assay	snATAC-seq Assay	total RNA-seq Assay
cell line
H9 Biosample	Search cell line, H9 for Mint-ChIP-seq, H3K27me3	Search cell line, H9 for Mint-ChIP-seq, H3K36me3	Search cell line, H9 for Mint-ChIP-seq, H3K4me1	Search cell line, H9 for Mint-ChIP-seq, H3K4me3	Search cell line, H9 for Mint-ChIP-seq, H3K9me3	Search cell line, H9 for Histone ChIP-seq, H2AFZ	Search cell line, H9 for Histone ChIP-seq, H2AK5ac	Search cell line, H9 for Histone ChIP-seq, H2BK120ac	Search cell line, H9 for Histone ChIP-seq, H2BK12ac	Search cell line, H9 for Histone ChIP-seq, H2BK15ac	Search cell line, H9 for Histone ChIP-seq, H2BK20ac	Search cell line, H9 for Histone ChIP-seq, H2BK5ac	Search cell line, H9 for Histone ChIP-seq, H3K14ac	Search cell line, H9 for Histone ChIP-seq, H3K18ac	Search cell line, H9 for Histone ChIP-seq, H3K23ac	Search cell line, H9 for Histone ChIP-seq, H3K23me2	Search cell line, H9 for Mint-ChIP-seq, H3K27ac	Search cell line, H9 for Histone ChIP-seq, H3K4ac	Search cell line, H9 for Histone ChIP-seq, H3K4me2	Search cell line, H9 for Histone ChIP-seq, H3K56ac	Search cell line, H9 for Histone ChIP-seq, H3K79me1	Search cell line, H9 for Histone ChIP-seq, H3K79me2	Search cell line, H9 for Histone ChIP-seq, H3K9ac	Search cell line, H9 for Histone ChIP-seq, H3T11ph	Search cell line, H9 for Histone ChIP-seq, H4K20me1	Search cell line, H9 for Histone ChIP-seq, H4K5ac	Search cell line, H9 for Histone ChIP-seq, H4K8ac	Search cell line, H9 for Histone ChIP-seq, H4K91ac	Search cell line, H9 for DNase-seq	Search cell line, H9 for ChIA-PET, RAD21	Search cell line, H9 for RNA microarray	Search cell line, H9 for Repli-chip	Search cell line, H9 for TF ChIP-seq, CTCF	Search cell line, H9 for WGBS	Search cell line, H9 for long read RNA-seq	Search cell line, H9 for microRNA-seq	Search cell line, H9 for snATAC-seq	Search cell line, H9 for total RNA-seq