permseq
- Status
- released
- Title
- permseq
- Description
- An R package that performs multi-read mapping of ChIP-seq datasets. permseq works with bowtie and takes as input fastq files . It can work with just ChIP-seq data or, when other complementary data such as DNase-seq, histone ChIP-seq are available, it can utilize these data sources as prior information for multi-read mapping. The output from permseq is a text file of aligned reads available in bed, tagAlign, or bam formats.
- Publications