- Description
- An R package for TF and histone ChIP-seq analysis. mosaics takes as input the aligned files. It provides diagnostics plots for evaluating how well the mosaics model fits and allows FDR control. The mosaics-hmm module provides boundary adjusted broad peak calls. The output from mosaics is a set of peaks in a number of formats including bed. mosaics also generates intermediate data files/objects such as genome-wide read counts at the bin level for specified bin sizes, wig files for visualizing on the browser.