The goal of the ENCODE project is to generate a comprehensive catalog of all functional elements. To facilitate this task, members of the consortium have developed and refined software tools. View all software used or developed by the ENCODE Consortium or select one of the following:
- Software tools used to identify ENCODE elements: On this page are brief descriptions of some of the software used to identify ENCODE elements. Software for identification of functional elements, for integrated analysis of multiple data types, and for quality measurement of the data are described.
- Software tools used to generate ENCODE quality metrics: On this page are brief descriptions of some of the software used to generate quality metrics for ENCODE datasets.
- External software tools used to create the ENCODE resource: On this page are brief descriptions of some of the software used to create the ENCODE resource. This software was not funded by ENCODE, or developed by the consortium.
- Software tools and resources for applying and analyzing ENCODE data: On this page are brief descriptions of software and resources that others might find useful for analyzing and using ENCODE data in their own research.