Summary for ENCSR888PLC
doi:10.17989/ENCSR888PLC
Summary
- Status
- released
- Description
- Reference epigenome for human Karpas-422 cell line
- Donor diversity
- single
- Assay
- ChIP-seq, RNA-seq, small RNA-seq, DNase-seq
- Target
- H3K4me1, H3K27ac, H3K36me3, H3K27me3, H3K9me3, H3K4me3
- Biosample summary
- Homo sapiens Karpas-422
- Diseases
- Not reported
Attribution
ENCODE3 project
- Lab
- ENCODE Consortium
- Award
- U41HG006992 (J. Michael Cherry, Stanford)
- Project
- ENCODE
- External resources
Experiments in ENCSR888PLC
Experiments
9 experiments
Accession | Assay | Target | Biosample summary | Lab | Status | Cart |
|---|---|---|---|---|---|---|
| ENCSR314LXG | RNA-seq | Homo sapiens Karpas-422 | Thomas Gingeras, CSHL | released | ||
| ENCSR019JDO | DNase-seq | Homo sapiens Karpas-422 | John Stamatoyannopoulos, UW | released | ||
| ENCSR867UKC | ChIP-seq | H3K36me3 | Homo sapiens Karpas-422 | Bradley Bernstein, Broad | released | |
| ENCSR306VSH | ChIP-seq | H3K4me1 | Homo sapiens Karpas-422 | Bradley Bernstein, Broad | released | |
| ENCSR978BQI | ChIP-seq | H3K9me3 | Homo sapiens Karpas-422 | Bradley Bernstein, Broad | released | |
| ENCSR910XKX | ChIP-seq | H3K4me3 | Homo sapiens Karpas-422 | Bradley Bernstein, Broad | released | |
| ENCSR963HAR | ChIP-seq | H3K27me3 | Homo sapiens Karpas-422 | Bradley Bernstein, Broad | released | |
| ENCSR660IQS | ChIP-seq | H3K27ac | Homo sapiens Karpas-422 | Bradley Bernstein, Broad | released | |
| ENCSR905KHW | small RNA-seq | Homo sapiens Karpas-422 | Thomas Gingeras, CSHL | released |
Control experiments
1 control experiment
Accession | Control type | Biosample summary | Lab | Status | Cart |
|---|---|---|---|---|---|
| ENCSR367UDO | input library | Homo sapiens Karpas-422 | Bradley Bernstein, Broad | released |