Summary for ENCSR809EFN
doi:10.17989/ENCSR809EFN
Summary
- Status
- released
- Description
- Reference epigenome for human A549 cell line
- Donor diversity
- single
- Assay
- whole-genome shotgun bisulfite sequencing, DNase-seq, ATAC-seq, polyA plus RNA-seq, small RNA-seq, ChIP-seq
- Target
- H3K4me3, CTCF, POLR2A
- Biosample summary
- Homo sapiens A549
- Diseases
- Not reported
Attribution
ENCODE3 project
- Lab
- ENCODE Consortium
- Award
- U41HG006992 (J. Michael Cherry, Stanford)
- Project
- ENCODE
- External resources
Experiments in ENCSR809EFN
Experiments
8 experiments
Accession | Assay | Target | Biosample summary | Lab | Status | Cart |
|---|---|---|---|---|---|---|
| ENCSR000CON | polyA plus RNA-seq | Homo sapiens A549 | Thomas Gingeras, CSHL | released | ||
| ENCSR000CSL | small RNA-seq | Homo sapiens A549 | Thomas Gingeras, CSHL | released | ||
| ENCSR000DMZ | ChIP-seq | POLR2A | Homo sapiens A549 | Vishwanath Iyer, UTA | released | |
| ENCSR000DNA | ChIP-seq | CTCF | Homo sapiens A549 | Vishwanath Iyer, UTA | released | |
| ENCSR000DPD | ChIP-seq | H3K4me3 | Homo sapiens A549 | John Stamatoyannopoulos, UW | released | |
| ENCSR000ELW | DNase-seq | Homo sapiens A549 | John Stamatoyannopoulos, UW | released | ||
| ENCSR032RGS | ATAC-seq | Homo sapiens A549 | Michael Snyder, Stanford | released | ||
| ENCSR481JIW | whole-genome shotgun bisulfite sequencing | Homo sapiens A549 | Richard Myers, HAIB | released |
Control experiments
2 control experiments
Accession | Control type | Biosample summary | Lab | Status | Cart |
|---|---|---|---|---|---|
| ENCSR000DNB | input library | Homo sapiens A549 | Vishwanath Iyer, UTA | released | |
| ENCSR000DPE | input library | Homo sapiens A549 | John Stamatoyannopoulos, UW | released |