Summary for ENCSR706RZK
Superseded by ENCSR797CXN
Summary
- Status
- archived
- Description
- REMC Epigenome (ENCODE) for A549 EtOH 0.02pct Lung Carcinoma Cell Line using donors/samples:A549
- Donor diversity
- single
- Assay
- polyA plus RNA-seq, DNase-seq, RRBS, ChIP-seq
- Target
- H3K27me3, H3K4me1, H3K27ac, H4K20me1, H3K79me2, H3K36me3, H2AFZ, H3K9ac, H3K4me2, H3K9me3, H3K4me3
- Biosample summary
- A549 cell line treated with dimethyl sulfoxide, ethanol
- Diseases
- Not reported
- Treatments
- dimethyl sulfoxide, ethanol
Attribution
Roadmap Epigenomics Mapping Consortium
- Lab
- Anshul Kundaje, Stanford
- Award
- U01DA025956 (Roadmap Epigenomics, Baylor)
- Project
- Roadmap
- Aliases
- roadmap-epigenomics:E114
- External resources
- None submitted
Experiments in ENCSR706RZK
Experiments
14 experiments
Accession | Assay | Target | Biosample summary | Lab | Status | Cart |
|---|---|---|---|---|---|---|
| ENCSR000AUM | ChIP-seq | H3K4me1 | Homo sapiens A549 treated with 0.02% ethanol for 1 hour | Bradley Bernstein, Broad | released | |
| ENCSR000AUL | ChIP-seq | H3K36me3 | Homo sapiens A549 treated with 0.02% ethanol for 1 hour | Bradley Bernstein, Broad | released | |
| ENCSR000AUN | ChIP-seq | H3K9me3 | Homo sapiens A549 treated with 0.02% ethanol for 1 hour | Bradley Bernstein, Broad | released | |
| ENCSR000AUI | ChIP-seq | H3K27ac | Homo sapiens A549 treated with 0.02% ethanol for 1 hour | Bradley Bernstein, Broad | released | |
| ENCSR000ASH | ChIP-seq | H3K4me3 | Homo sapiens A549 treated with 0.02% ethanol for 1 hour | Bradley Bernstein, Broad | released | |
| ENCSR000AUK | ChIP-seq | H3K27me3 | Homo sapiens A549 treated with 0.02% ethanol for 1 hour | Bradley Bernstein, Broad | released | |
| ENCSR000ASV | ChIP-seq | H3K9ac | Homo sapiens A549 treated with 0.02% ethanol for 1 hour | Bradley Bernstein, Broad | released | |
| ENCSR000AVI | ChIP-seq | H3K4me2 | Homo sapiens A549 treated with 0.02% ethanol for 1 hour | Bradley Bernstein, Broad | released | |
| ENCSR000AUO | ChIP-seq | H4K20me1 | Homo sapiens A549 treated with 0.02% ethanol for 1 hour | Bradley Bernstein, Broad | released | |
| ENCSR000ATP | ChIP-seq | H3K79me2 | Homo sapiens A549 treated with 0.02% ethanol for 1 hour | Bradley Bernstein, Broad | released | |
| ENCSR000AUH | ChIP-seq | H2AFZ | Homo sapiens A549 treated with 0.02% ethanol for 1 hour | Bradley Bernstein, Broad | released | |
| ENCSR000ELW | DNase-seq | Homo sapiens A549 | John Stamatoyannopoulos, UW | released | ||
| ENCSR000CON | polyA plus RNA-seq | Homo sapiens A549 | Thomas Gingeras, CSHL | released | ||
| ENCSR000DDI | RRBS | Homo sapiens A549 treated with 0.02% dimethyl sulfoxide for 7 days | Richard Myers, HAIB | released |
Control experiments
1 control experiment
Accession | Control type | Biosample summary | Lab | Status | Cart |
|---|---|---|---|---|---|
| ENCSR000ASS | input library | Homo sapiens A549 treated with 0.02% ethanol for 1 hour | Bradley Bernstein, Broad | released |