Summary for ENCSR701EOS
doi:10.17989/ENCSR701EOS
Summary
- Status
- released
- Description
- REMC Epigenome (Class 2) for Psoas Muscle using donors/samples:STL001; STL003
- Donor diversity
- composite
- Assay
- polyA plus RNA-seq, DNase-seq, ChIP-seq, whole-genome shotgun bisulfite sequencing
- Target
- H3K4me1, H3K27ac, H3K36me3, H3K27me3, H3K9me3, H3K4me3
- Biosample summary
- psoas muscle tissue
- Diseases
- Not reported
Attribution
Roadmap Epigenomics Mapping Consortium
- Lab
- Anshul Kundaje, Stanford
- Award
- U01DA025956 (Roadmap Epigenomics, Baylor)
- Project
- Roadmap
- Aliases
- roadmap-epigenomics:E100
- External resources
- Tags
Experiments in ENCSR701EOS
Experiments
14 experiments
Accession | Assay | Target | Donors | Biosample summary | Lab | Status | Cart |
|---|---|---|---|---|---|---|---|
| ENCSR843HXR | polyA plus RNA-seq | ENCDO058AAA | Homo sapiens psoas muscle tissue male adult (34 years) | Joe Ecker, Salk | released | ||
| ENCSR817TLH | polyA plus RNA-seq | ENCDO478OMA | Homo sapiens psoas muscle tissue male child (3 years) | Joe Ecker, Salk | released | ||
| ENCSR414XEF | whole-genome shotgun bisulfite sequencing | ENCDO478OMA | Homo sapiens psoas muscle tissue male child (3 years) | Joe Ecker, Salk | released | ||
| ENCSR364ANL | whole-genome shotgun bisulfite sequencing | ENCDO058AAA | Homo sapiens psoas muscle tissue male adult (34 years) | Joe Ecker, Salk | released | ||
| ENCSR426TPQ | DNase-seq | ENCDO478OMA | Homo sapiens psoas muscle tissue male child (3 years) | John Stamatoyannopoulos, UW | released | ||
| ENCSR720SAS | ChIP-seq | H3K27me3 | ENCDO058AAA | Homo sapiens psoas muscle tissue male adult (34 years) | Bing Ren, UCSD | released | |
| ENCSR700NGJ | ChIP-seq | H3K4me1 | ENCDO478OMA | Homo sapiens psoas muscle tissue male child (3 years) | Bing Ren, UCSD | released | |
| ENCSR410UUH | ChIP-seq | H3K4me1 | ENCDO058AAA | Homo sapiens psoas muscle tissue male adult (34 years) | Bing Ren, UCSD | released | |
| ENCSR949OYZ | ChIP-seq | H3K4me3 | ENCDO058AAA | Homo sapiens psoas muscle tissue male adult (34 years) | Bing Ren, UCSD | released | |
| ENCSR791ISZ | ChIP-seq | H3K27ac | ENCDO058AAA | Homo sapiens psoas muscle tissue male adult (34 years) | Bing Ren, UCSD | released | |
| ENCSR367WYJ | ChIP-seq | H3K27ac | ENCDO478OMA | Homo sapiens psoas muscle tissue male child (3 years) | Bing Ren, UCSD | released | |
| ENCSR394DRL | ChIP-seq | H3K9me3 | ENCDO478OMA | Homo sapiens psoas muscle tissue male child (3 years) | Bing Ren, UCSD | released | |
| ENCSR245BEV | ChIP-seq | H3K4me3 | ENCDO478OMA | Homo sapiens psoas muscle tissue male child (3 years) | Bing Ren, UCSD | released | |
| ENCSR277PDE | ChIP-seq | H3K36me3 | ENCDO478OMA | Homo sapiens psoas muscle tissue male child (3 years) | Bing Ren, UCSD | released |
Control experiments
2 control experiments
Accession | Control type | Biosample summary | Lab | Status | Cart |
|---|---|---|---|---|---|
| ENCSR688CIB | input library | Homo sapiens psoas muscle tissue male adult (34 years) | Bing Ren, UCSD | released | |
| ENCSR163UEW | input library | Homo sapiens psoas muscle tissue male child (3 years) | Bing Ren, UCSD | released |