Summary for ENCSR669BAL
doi:10.17989/ENCSR669BAL
Summary
- Status
- released
- Description
- Reference epigenome for human stomach (51 year old female)
- Donor diversity
- single
- Assay
- ChIP-seq, RNA-seq, small RNA-seq, whole-genome shotgun bisulfite sequencing, DNase-seq
- Target
- POLR2AphosphoS5, H3K4me1, H3K27ac, H3K36me3, H3K27me3, H3K9me3, POLR2A, H3K4me3, CTCF
- Biosample summary
- Homo sapiens stomach tissue female adult (51 years)
- Diseases
- Not reported
Attribution
ENCODE3 project
- Lab
- ENCODE Consortium
- Award
- U41HG006992 (J. Michael Cherry, Stanford)
- Project
- ENCODE
- External resources
- Tags
Experiments in ENCSR669BAL
Experiments
13 experiments
Accession | Assay | Target | Biosample summary | Lab | Status | Cart |
|---|---|---|---|---|---|---|
| ENCSR009RJD | ChIP-seq | H3K4me1 | Homo sapiens stomach tissue female adult (51 years) | Bradley Bernstein, Broad | released | |
| ENCSR038YKU | ChIP-seq | POLR2A | Homo sapiens stomach tissue female adult (51 years) | Michael Snyder, Stanford | released | |
| ENCSR173AIR | ChIP-seq | CTCF | Homo sapiens stomach tissue female adult (51 years) | Michael Snyder, Stanford | released | |
| ENCSR330MAM | ChIP-seq | H3K27me3 | Homo sapiens stomach tissue female adult (51 years) | Bradley Bernstein, Broad | released | |
| ENCSR492BHN | ChIP-seq | H3K4me3 | Homo sapiens stomach tissue female adult (51 years) | Bradley Bernstein, Broad | released | |
| ENCSR573RGL | small RNA-seq | Homo sapiens stomach tissue female adult (51 years) | Thomas Gingeras, CSHL | released | ||
| ENCSR598OBF | whole-genome shotgun bisulfite sequencing | Homo sapiens stomach tissue female adult (51 years) | Richard Myers, HAIB | released | ||
| ENCSR641ZPF | DNase-seq | Homo sapiens stomach tissue female adult (51 years) | John Stamatoyannopoulos, UW | released | ||
| ENCSR714JRB | ChIP-seq | POLR2AphosphoS5 | Homo sapiens stomach tissue female adult (51 years) | Richard Myers, HAIB | released | |
| ENCSR751BHO | ChIP-seq | H3K27ac | Homo sapiens stomach tissue female adult (51 years) | Bradley Bernstein, Broad | released | |
| ENCSR787TQW | ChIP-seq | H3K9me3 | Homo sapiens stomach tissue female adult (51 years) | Bradley Bernstein, Broad | released | |
| ENCSR819DOR | ChIP-seq | H3K36me3 | Homo sapiens stomach tissue female adult (51 years) | Bradley Bernstein, Broad | released | |
| ENCSR853WOM | RNA-seq | Homo sapiens stomach tissue female adult (51 years) | Thomas Gingeras, CSHL | released |
Control experiments
3 control experiments
Accession | Control type | Biosample summary | Lab | Status | Cart |
|---|---|---|---|---|---|
| ENCSR948DNK | input library | Homo sapiens stomach tissue female adult (51 years) | Bradley Bernstein, Broad | released | |
| ENCSR955OCL | input library | Homo sapiens stomach tissue female adult (51 years) | Michael Snyder, Stanford | released | |
| ENCSR864PNP | input library | Homo sapiens stomach tissue female adult (51 years) | Richard Myers, HAIB | released |