Summary for ENCSR658KLY
doi:10.17989/ENCSR658KLY
Summary
- Status
- released
- Description
- REMC Epigenome (Class 4) for Primary T Helper Memory Cells from Peripheral Blood 2 using donors/samples:20;Donor_100_7_pooled_leukopaks_Jan_7_2011;Donor_101_8_pooled_leukopaks_Jan_20_2011
- Donor diversity
- composite
- Assay
- MeDIP-seq, polyA plus RNA-seq, ChIP-seq, MRE-seq, microRNA-seq
- Target
- H3K27me3, H3K4me1, H3K27ac, H3K36me3, Methylcytidine, H3K9me3, H3K4me3
- Biosample summary
- CD4-positive, alpha-beta memory T cell primary cell
- Diseases
- Not reported
Attribution
Roadmap Epigenomics Mapping Consortium
- Lab
- Anshul Kundaje, Stanford
- Award
- U01DA025956 (Roadmap Epigenomics, Baylor)
- Project
- Roadmap
- Aliases
- roadmap-epigenomics:E037
- External resources
- Tags
Experiments in ENCSR658KLY
Experiments
17 experiments
Accession | Assay | Target | Donors | Biosample summary | Lab | Status | Cart |
|---|---|---|---|---|---|---|---|
| ENCSR199AQA | microRNA-seq | ENCDO678FLL | Homo sapiens CD4-positive, alpha-beta memory T cell male adult (29 years) | Joseph Costello, UCSF | released | ||
| ENCSR489KLG | polyA plus RNA-seq | ENCDO678FLL | Homo sapiens CD4-positive, alpha-beta memory T cell male adult (29 years) | Joseph Costello, UCSF | archived | ||
| ENCSR027DEM | MeDIP-seq | Methylcytidine | ENCDO897QZR | Homo sapiens CD4-positive, alpha-beta memory T cell female adult (34 years) | Joseph Costello, UCSF | archived | |
| ENCSR158NLK | MeDIP-seq | Methylcytidine | ENCDO849FFO | Homo sapiens CD4-positive, alpha-beta memory T cell female adult (30 years) | Joseph Costello, UCSF | archived | |
| ENCSR829BWY | MeDIP-seq | Methylcytidine | ENCDO059KVJ | Homo sapiens CD4-positive, alpha-beta memory T cell female adult (20 years) | Joseph Costello, UCSF | archived | |
| ENCSR389DME | MRE-seq | ENCDO897QZR | Homo sapiens CD4-positive, alpha-beta memory T cell female adult (34 years) | Joseph Costello, UCSF | archived | ||
| ENCSR020DZM | MRE-seq | ENCDO849FFO | Homo sapiens CD4-positive, alpha-beta memory T cell female adult (30 years) | Joseph Costello, UCSF | archived | ||
| ENCSR241OQK | MRE-seq | ENCDO059KVJ | Homo sapiens CD4-positive, alpha-beta memory T cell female adult (20 years) | Joseph Costello, UCSF | archived | ||
| ENCSR077FZT | ChIP-seq | H3K4me3 | ENCDO922CEJ | Homo sapiens CD4-positive, alpha-beta memory T cell | Bradley Bernstein, Broad | released | |
| ENCSR887ESB | ChIP-seq | H3K4me1 | ENCDO688UWB, ENCDO922CEJ | Homo sapiens CD4-positive, alpha-beta memory T cell | Bradley Bernstein, Broad | released | |
| ENCSR724GUS | ChIP-seq | H3K27ac | ENCDO688UWB, ENCDO922CEJ | Homo sapiens CD4-positive, alpha-beta memory T cell | Bradley Bernstein, Broad | released | |
| ENCSR702RZM | ChIP-seq | H3K27me3 | ENCDO688UWB, ENCDO922CEJ | Homo sapiens CD4-positive, alpha-beta memory T cell | Bradley Bernstein, Broad | released | |
| ENCSR807WEO | ChIP-seq | H3K4me3 | ENCDO966YSM | Homo sapiens CD4-positive, alpha-beta memory T cell originated from blood cell | Bradley Bernstein, Broad | released | |
| ENCSR580WRV | ChIP-seq | H3K36me3 | ENCDO688UWB, ENCDO922CEJ | Homo sapiens CD4-positive, alpha-beta memory T cell | Bradley Bernstein, Broad | released | |
| ENCSR223APP | ChIP-seq | H3K4me3 | ENCDO688UWB | Homo sapiens CD4-positive, alpha-beta memory T cell | Bradley Bernstein, Broad | released | |
| ENCSR239SNR | ChIP-seq | H3K9me3 | ENCDO922CEJ | Homo sapiens CD4-positive, alpha-beta memory T cell | Bradley Bernstein, Broad | released | |
| ENCSR333VFQ | ChIP-seq | H3K9me3 | ENCDO688UWB | Homo sapiens CD4-positive, alpha-beta memory T cell | Bradley Bernstein, Broad | released |
Control experiments
3 control experiments
Accession | Control type | Biosample summary | Lab | Status | Cart |
|---|---|---|---|---|---|
| ENCSR456XCT | input library | Homo sapiens CD4-positive, alpha-beta memory T cell | Bradley Bernstein, Broad | released | |
| ENCSR405VDU | input library | Homo sapiens CD4-positive, alpha-beta memory T cell | Bradley Bernstein, Broad | released | |
| ENCSR919WHB | input library | Homo sapiens CD4-positive, alpha-beta memory T cell originated from blood cell | Bradley Bernstein, Broad | released |