Summary for ENCSR629UDB
doi:10.17989/ENCSR629UDB
Summary
- Status
- released
- Description
- Reference epigenome for mouse hindbrain (13.5 day embryonic)
- Donor diversity
- single
- Assay
- whole-genome shotgun bisulfite sequencing, ATAC-seq, polyA plus RNA-seq, ChIP-seq, microRNA-seq
- Target
- H3K36me3, H3K4me3, H3K27ac, H3K9ac, H3K27me3, H3K9me3, H3K4me1, H3K4me2
- Biosample summary
- Mus musculus strain B6NCrl hindbrain tissue embryo (13.5 days)
- Diseases
- Not reported
Attribution
ENCODE3 project
- Lab
- ENCODE Consortium
- Award
- U41HG006992 (J. Michael Cherry, Stanford)
- Project
- ENCODE
- External resources
Experiments in ENCSR629UDB
Experiments
12 experiments
Accession | Assay | Target | Biosample summary | Lab | Status | Cart |
|---|---|---|---|---|---|---|
| ENCSR176BYZ | ATAC-seq | Mus musculus strain B6NCrl hindbrain tissue embryo (13.5 days) | Bing Ren, UCSD | released | ||
| ENCSR179ITA | microRNA-seq | Mus musculus strain B6NCrl hindbrain tissue embryo (13.5 days) | Ali Mortazavi, UCI | released | ||
| ENCSR190RKJ | ChIP-seq | H3K9ac | Mus musculus strain B6NCrl hindbrain tissue embryo (13.5 days) | Bing Ren, UCSD | released | |
| ENCSR325JLI | ChIP-seq | H3K9me3 | Mus musculus strain B6NCrl hindbrain tissue embryo (13.5 days) | Bing Ren, UCSD | released | |
| ENCSR315ZEU | ChIP-seq | H3K4me3 | Mus musculus strain B6NCrl hindbrain tissue embryo (13.5 days) | Bing Ren, UCSD | released | |
| ENCSR344HHI | ChIP-seq | H3K27ac | Mus musculus strain B6NCrl hindbrain tissue embryo (13.5 days) | Bing Ren, UCSD | released | |
| ENCSR349NIS | ChIP-seq | H3K4me1 | Mus musculus strain B6NCrl hindbrain tissue embryo (13.5 days) | Bing Ren, UCSD | released | |
| ENCSR734GST | whole-genome shotgun bisulfite sequencing | Mus musculus strain B6NCrl hindbrain tissue embryo (13.5 days) | Joe Ecker, Salk | released | ||
| ENCSR921PRX | polyA plus RNA-seq | Mus musculus strain B6NCrl hindbrain tissue embryo (13.5 days) | Barbara Wold, Caltech | released | ||
| ENCSR947QOH | ChIP-seq | H3K4me2 | Mus musculus strain B6NCrl hindbrain tissue embryo (13.5 days) | Bing Ren, UCSD | released | |
| ENCSR972MUO | ChIP-seq | H3K36me3 | Mus musculus strain B6NCrl hindbrain tissue embryo (13.5 days) | Bing Ren, UCSD | released | |
| ENCSR837SKW | ChIP-seq | H3K27me3 | Mus musculus strain B6NCrl hindbrain tissue embryo (13.5 days) | Bing Ren, UCSD | released |
Control experiments
1 control experiment
Accession | Control type | Biosample summary | Lab | Status | Cart |
|---|---|---|---|---|---|
| ENCSR545RUT | input library | Mus musculus strain B6NCrl hindbrain tissue embryo (13.5 days) | Bing Ren, UCSD | released |