Summary for ENCSR557OQA
doi:10.17989/ENCSR557OQA
Summary
- Status
- released
- Description
- REMC Epigenome (Class 2) for Brain Germinal Matrix using donors/samples:HuFGM02
- Donor diversity
- single
- Assay
- polyA plus RNA-seq, whole-genome shotgun bisulfite sequencing, microRNA-seq, ChIP-seq
- Target
- H3K27me3, H3K4me1, H3K36me3, H3K9me3, H3K4me3
- Biosample summary
- Homo sapiens germinal matrix tissue male embryo (20 weeks)
- Diseases
- Not reported
Attribution
Roadmap Epigenomics Mapping Consortium
- Lab
- Anshul Kundaje, Stanford
- Award
- U01DA025956 (Roadmap Epigenomics, Baylor)
- Project
- Roadmap
- Aliases
- roadmap-epigenomics:E070
- External resources
Experiments in ENCSR557OQA
Experiments
8 experiments
Accession | Assay | Target | Biosample summary | Lab | Status | Cart |
|---|---|---|---|---|---|---|
| ENCSR736YYJ | microRNA-seq | Homo sapiens germinal matrix tissue male embryo (20 weeks) | Joseph Costello, UCSF | released | ||
| ENCSR969JYY | polyA plus RNA-seq | Homo sapiens germinal matrix tissue male embryo (20 weeks) | Joseph Costello, UCSF | released | ||
| ENCSR374BVM | whole-genome shotgun bisulfite sequencing | Homo sapiens germinal matrix tissue male embryo (20 weeks) | Joseph Costello, UCSF | archived | ||
| ENCSR575ICR | ChIP-seq | H3K4me3 | Homo sapiens germinal matrix tissue male embryo (20 weeks) | Joseph Costello, UCSF | released | |
| ENCSR064VLH | ChIP-seq | H3K4me1 | Homo sapiens germinal matrix tissue male embryo (20 weeks) | Joseph Costello, UCSF | released | |
| ENCSR820ABR | ChIP-seq | H3K9me3 | Homo sapiens germinal matrix tissue male embryo (20 weeks) | Joseph Costello, UCSF | released | |
| ENCSR717BNA | ChIP-seq | H3K36me3 | Homo sapiens germinal matrix tissue male embryo (20 weeks) | Joseph Costello, UCSF | released | |
| ENCSR494OXB | ChIP-seq | H3K27me3 | Homo sapiens germinal matrix tissue male embryo (20 weeks) | Joseph Costello, UCSF | released |
Control experiments
1 control experiment
Accession | Control type | Biosample summary | Lab | Status | Cart |
|---|---|---|---|---|---|
| ENCSR517EEQ | input library | Homo sapiens germinal matrix tissue male embryo (20 weeks) | Joseph Costello, UCSF | released |