Summary for ENCSR536NFD
doi:10.17989/ENCSR536NFD
Summary
- Status
- released
- Description
- Reference epigenome for human breast epithelium (53 year old female)
- Donor diversity
- single
- Assay
- RNA-seq, ChIP-seq, ATAC-seq
- Target
- H3K27me3, H3K4me1, H3K27ac, POLR2AphosphoS5, H3K36me3, POLR2A, CTCF, H3K9me3, H3K4me3
- Biosample summary
- Homo sapiens breast epithelium tissue female adult (53 years)
- Diseases
- Not reported
Attribution
ENCODE3 project
- Lab
- ENCODE Consortium
- Award
- U41HG006992 (J. Michael Cherry, Stanford)
- Project
- ENCODE
- External resources
- Tags
Experiments in ENCSR536NFD
Experiments
11 experiments
Accession | Assay | Target | Biosample summary | Lab | Status | Cart |
|---|---|---|---|---|---|---|
| ENCSR034ZKE | ChIP-seq | H3K27ac | Homo sapiens breast epithelium tissue female adult (53 years) | Bradley Bernstein, Broad | released | |
| ENCSR299CAV | ChIP-seq | POLR2A | Homo sapiens breast epithelium tissue female adult (53 years) | Michael Snyder, Stanford | released | |
| ENCSR304XUZ | ChIP-seq | CTCF | Homo sapiens breast epithelium tissue female adult (53 years) | Michael Snyder, Stanford | released | |
| ENCSR403UOU | ChIP-seq | H3K9me3 | Homo sapiens breast epithelium tissue female adult (53 years) | Bradley Bernstein, Broad | released | |
| ENCSR416AUW | ChIP-seq | H3K4me3 | Homo sapiens breast epithelium tissue female adult (53 years) | Bradley Bernstein, Broad | released | |
| ENCSR434TEU | RNA-seq | Homo sapiens breast epithelium tissue female adult (53 years) | Thomas Gingeras, CSHL | released | ||
| ENCSR543YQF | ChIP-seq | H3K36me3 | Homo sapiens breast epithelium tissue female adult (53 years) | Bradley Bernstein, Broad | released | |
| ENCSR553IAW | ChIP-seq | H3K4me1 | Homo sapiens breast epithelium tissue female adult (53 years) | Bradley Bernstein, Broad | released | |
| ENCSR654UYP | ATAC-seq | Homo sapiens breast epithelium tissue female adult (53 years) | Michael Snyder, Stanford | released | ||
| ENCSR770WSE | ChIP-seq | H3K27me3 | Homo sapiens breast epithelium tissue female adult (53 years) | Bradley Bernstein, Broad | released | |
| ENCSR939FGB | ChIP-seq | POLR2AphosphoS5 | Homo sapiens breast epithelium tissue female adult (53 years) | Richard Myers, HAIB | released |
Control experiments
3 control experiments
Accession | Control type | Biosample summary | Lab | Status | Cart |
|---|---|---|---|---|---|
| ENCSR247XFQ | input library | Homo sapiens breast epithelium tissue female adult (53 years) | Bradley Bernstein, Broad | released | |
| ENCSR366VWM | input library | Homo sapiens breast epithelium tissue female adult (53 years) | Michael Snyder, Stanford | released | |
| ENCSR621IYT | input library | Homo sapiens breast epithelium tissue female adult (53 years) | Richard Myers, HAIB | released |