Summary for ENCSR519AFE
doi:10.17989/ENCSR519AFE
Summary
- Status
- released
- Description
- Reference epigenome for human spleen (53 year old female)
- Donor diversity
- single
- Assay
- ChIP-seq, small RNA-seq, RNA-seq, DNase-seq
- Target
- POLR2AphosphoS5, H3K4me1, H3K27ac, H3K36me3, H3K27me3, H3K9me3, H3K4me3, POLR2A, CTCF
- Biosample summary
- Homo sapiens spleen tissue female adult (53 years)
- Diseases
- Not reported
Attribution
ENCODE3 project
- Lab
- ENCODE Consortium
- Award
- U41HG006992 (J. Michael Cherry, Stanford)
- Project
- ENCODE
- External resources
- Tags
Experiments in ENCSR519AFE
Experiments
12 experiments
Accession | Assay | Target | Biosample summary | Lab | Status | Cart |
|---|---|---|---|---|---|---|
| ENCSR105URN | ChIP-seq | H3K9me3 | Homo sapiens spleen tissue female adult (53 years) | Bradley Bernstein, Broad | released | |
| ENCSR128GBN | DNase-seq | Homo sapiens spleen tissue female adult (53 years) | John Stamatoyannopoulos, UW | released | ||
| ENCSR161FEJ | ChIP-seq | H3K27me3 | Homo sapiens spleen tissue female adult (53 years) | Bradley Bernstein, Broad | released | |
| ENCSR197QDK | ChIP-seq | H3K4me3 | Homo sapiens spleen tissue female adult (53 years) | Bradley Bernstein, Broad | released | |
| ENCSR289VTP | ChIP-seq | POLR2A | Homo sapiens spleen tissue female adult (53 years) | Michael Snyder, Stanford | released | |
| ENCSR307FBN | small RNA-seq | Homo sapiens spleen tissue female adult (53 years) | Thomas Gingeras, CSHL | released | ||
| ENCSR589TCU | ChIP-seq | H3K36me3 | Homo sapiens spleen tissue female adult (53 years) | Bradley Bernstein, Broad | released | |
| ENCSR601FEB | ChIP-seq | CTCF | Homo sapiens spleen tissue female adult (53 years) | Bradley Bernstein, Broad | released | |
| ENCSR659RJP | ChIP-seq | H3K4me1 | Homo sapiens spleen tissue female adult (53 years) | Bradley Bernstein, Broad | released | |
| ENCSR726HTS | ChIP-seq | H3K27ac | Homo sapiens spleen tissue female adult (53 years) | Bradley Bernstein, Broad | released | |
| ENCSR900SGE | RNA-seq | Homo sapiens spleen tissue female adult (53 years) | Thomas Gingeras, CSHL | released | ||
| ENCSR959UQA | ChIP-seq | POLR2AphosphoS5 | Homo sapiens spleen tissue female adult (53 years) | Richard Myers, HAIB | released |
Control experiments
3 control experiments
Accession | Control type | Biosample summary | Lab | Status | Cart |
|---|---|---|---|---|---|
| ENCSR189UPU | input library | Homo sapiens spleen tissue female adult (53 years) | Bradley Bernstein, Broad | released | |
| ENCSR236WEQ | input library | Homo sapiens spleen tissue female adult (53 years) | Michael Snyder, Stanford | released | |
| ENCSR936XMR | input library | Homo sapiens spleen tissue female adult (53 years) | Richard Myers, HAIB | released |