Summary for ENCSR465PPP
doi:10.17989/ENCSR465PPP
Summary
- Status
- released
- Description
- REMC Epigenome (Class 4) for Primary T CD8+ Naive Cells from Peripheral Blood using donors/samples:Donor_100_7_pooled_leukopaks_Jan_7_2011;Donor_101_8_pooled_leukopaks_Jan_20_2011;TC001;TC010
- Donor diversity
- composite
- Assay
- MeDIP-seq, polyA plus RNA-seq, ChIP-seq, MRE-seq, microRNA-seq
- Target
- H3K27me3, H3K4me1, H3K27ac, H3K36me3, Methylcytidine, H3K9ac, H3K9me3, H3K4me3
- Biosample summary
- CD8-positive, alpha-beta T cell primary cell
- Diseases
- Not reported
Attribution
Roadmap Epigenomics Mapping Consortium
- Lab
- Anshul Kundaje, Stanford
- Award
- U01DA025956 (Roadmap Epigenomics, Baylor)
- Project
- Roadmap
- Aliases
- roadmap-epigenomics:E047
- External resources
- Tags
Experiments in ENCSR465PPP
Experiments
21 experiments
Accession | Assay | Target | Donors | Biosample summary | Lab | Status | Cart |
|---|---|---|---|---|---|---|---|
| ENCSR938HCN | microRNA-seq | ENCDO678FLL | Homo sapiens CD8-positive, alpha-beta T cell male adult (29 years) | Joseph Costello, UCSF | released | ||
| ENCSR642GSA | polyA plus RNA-seq | ENCDO678FLL | Homo sapiens CD8-positive, alpha-beta T cell male adult (29 years) | Joseph Costello, UCSF | archived | ||
| ENCSR895KPP | MRE-seq | ENCDO897QZR | Homo sapiens CD8-positive, alpha-beta T cell female adult (34 years) | Joseph Costello, UCSF | archived | ||
| ENCSR455MRT | MRE-seq | ENCDO849FFO | Homo sapiens CD8-positive, alpha-beta T cell female adult (30 years) | Joseph Costello, UCSF | archived | ||
| ENCSR734XKY | MRE-seq | ENCDO059KVJ | Homo sapiens CD8-positive, alpha-beta T cell female adult (20 years) | Joseph Costello, UCSF | archived | ||
| ENCSR918UUX | MeDIP-seq | Methylcytidine | ENCDO897QZR | Homo sapiens CD8-positive, alpha-beta T cell female adult (34 years) | Joseph Costello, UCSF | archived | |
| ENCSR028IZM | MeDIP-seq | Methylcytidine | ENCDO849FFO | Homo sapiens CD8-positive, alpha-beta T cell female adult (30 years) | Joseph Costello, UCSF | archived | |
| ENCSR628WAZ | MeDIP-seq | Methylcytidine | ENCDO059KVJ | Homo sapiens CD8-positive, alpha-beta T cell female adult (20 years) | Joseph Costello, UCSF | archived | |
| ENCSR835OJV | ChIP-seq | H3K27ac | ENCDO922CEJ, ENCDO688UWB | Homo sapiens CD8-positive, alpha-beta T cell | Bradley Bernstein, Broad | released | |
| ENCSR348UWU | ChIP-seq | H3K9ac | ENCDO123NFT | Homo sapiens CD8-positive, alpha-beta T cell male adult (21 years) | Joseph Costello, UCSF | released | |
| ENCSR166ZZZ | ChIP-seq | H3K4me3 | ENCDO273TST | Homo sapiens CD8-positive, alpha-beta T cell male adult (28 years) | Joseph Costello, UCSF | released | |
| ENCSR797GOJ | ChIP-seq | H3K27me3 | ENCDO922CEJ, ENCDO688UWB | Homo sapiens CD8-positive, alpha-beta T cell | Bradley Bernstein, Broad | released | |
| ENCSR694CDP | ChIP-seq | H3K36me3 | ENCDO922CEJ, ENCDO688UWB | Homo sapiens CD8-positive, alpha-beta T cell | Bradley Bernstein, Broad | released | |
| ENCSR422LQX | ChIP-seq | H3K4me1 | ENCDO123NFT | Homo sapiens CD8-positive, alpha-beta T cell male adult (21 years) | Joseph Costello, UCSF | released | |
| ENCSR639HVJ | ChIP-seq | H3K27me3 | ENCDO123NFT | Homo sapiens CD8-positive, alpha-beta T cell male adult (21 years) | Joseph Costello, UCSF | released | |
| ENCSR681OSD | ChIP-seq | H3K36me3 | ENCDO123NFT | Homo sapiens CD8-positive, alpha-beta T cell male adult (21 years) | Joseph Costello, UCSF | released | |
| ENCSR815PSO | ChIP-seq | H3K9me3 | ENCDO123NFT | Homo sapiens CD8-positive, alpha-beta T cell male adult (21 years) | Joseph Costello, UCSF | released | |
| ENCSR660KHZ | ChIP-seq | H3K4me3 | ENCDO123NFT | Homo sapiens CD8-positive, alpha-beta T cell male adult (21 years) | Joseph Costello, UCSF | released | |
| ENCSR631BPS | ChIP-seq | H3K4me1 | ENCDO922CEJ, ENCDO688UWB | Homo sapiens CD8-positive, alpha-beta T cell | Bradley Bernstein, Broad | released | |
| ENCSR905SHH | ChIP-seq | H3K9me3 | ENCDO922CEJ, ENCDO688UWB | Homo sapiens CD8-positive, alpha-beta T cell | Bradley Bernstein, Broad | released | |
| ENCSR231FDF | ChIP-seq | H3K4me3 | ENCDO688UWB, ENCDO922CEJ | Homo sapiens CD8-positive, alpha-beta T cell | Bradley Bernstein, Broad | released |
Control experiments
3 control experiments
Accession | Control type | Biosample summary | Lab | Status | Cart |
|---|---|---|---|---|---|
| ENCSR072QNY | input library | Homo sapiens CD8-positive, alpha-beta T cell | Bradley Bernstein, Broad | released | |
| ENCSR513BYX | input library | Homo sapiens CD8-positive, alpha-beta T cell male adult (21 years) | Joseph Costello, UCSF | released | |
| ENCSR577ACO | input library | Homo sapiens CD8-positive, alpha-beta T cell male adult (28 years) | Joseph Costello, UCSF | released |