Summary for ENCSR464TTP
doi:10.17989/ENCSR464TTP
Summary
- Status
- released
- Description
- Reference epigenome for human heart left ventricle (53 year old female)
- Donor diversity
- single
- Assay
- ChIP-seq, RNA-seq, whole-genome shotgun bisulfite sequencing, microRNA-seq, DNase-seq, ATAC-seq
- Target
- H3K4me1, H3K27ac, H3K36me3, H3K9me3, H3K27me3, POLR2A, H3K4me3, CTCF
- Biosample summary
- Homo sapiens heart left ventricle tissue female adult (53 years)
- Diseases
- Not reported
Attribution
ENCODE3 project
- Lab
- ENCODE Consortium
- Award
- U41HG006992 (J. Michael Cherry, Stanford)
- Project
- ENCODE
- External resources
- Tags
Experiments in ENCSR464TTP
Experiments
13 experiments
Accession | Assay | Target | Biosample summary | Lab | Status | Cart |
|---|---|---|---|---|---|---|
| ENCSR000XAA | ChIP-seq | H3K9me3 | Homo sapiens heart left ventricle tissue female adult (53 years) | Bradley Bernstein, Broad | released | |
| ENCSR070CMW | DNase-seq | Homo sapiens heart left ventricle tissue female adult (53 years) | John Stamatoyannopoulos, UW | released | ||
| ENCSR336YRS | ChIP-seq | POLR2A | Homo sapiens heart left ventricle tissue female adult (53 years) | Michael Snyder, Stanford | released | |
| ENCSR391VGU | RNA-seq | Homo sapiens heart left ventricle tissue female adult (53 years) | Thomas Gingeras, CSHL | released | ||
| ENCSR438QZN | ChIP-seq | H3K4me1 | Homo sapiens heart left ventricle tissue female adult (53 years) | Bradley Bernstein, Broad | released | |
| ENCSR500ZGF | ChIP-seq | H3K36me3 | Homo sapiens heart left ventricle tissue female adult (53 years) | Bradley Bernstein, Broad | released | |
| ENCSR544APK | ChIP-seq | CTCF | Homo sapiens heart left ventricle tissue female adult (53 years) | Michael Snyder, Stanford | released | |
| ENCSR766GKN | whole-genome shotgun bisulfite sequencing | Homo sapiens heart left ventricle tissue female adult (53 years) | Richard Myers, HAIB | released | ||
| ENCSR851EBF | ATAC-seq | Homo sapiens heart left ventricle tissue female adult (53 years) | Michael Snyder, Stanford | released | ||
| ENCSR854OXF | ChIP-seq | H3K27ac | Homo sapiens heart left ventricle tissue female adult (53 years) | Bradley Bernstein, Broad | released | |
| ENCSR901SIL | ChIP-seq | H3K4me3 | Homo sapiens heart left ventricle tissue female adult (53 years) | Bradley Bernstein, Broad | released | |
| ENCSR988JLN | ChIP-seq | H3K27me3 | Homo sapiens heart left ventricle tissue female adult (53 years) | Bradley Bernstein, Broad | released | |
| ENCSR792MDW | microRNA-seq | Homo sapiens heart left ventricle tissue female adult (53 years) | Ali Mortazavi, UCI | released |
Control experiments
2 control experiments
Accession | Control type | Biosample summary | Lab | Status | Cart |
|---|---|---|---|---|---|
| ENCSR526EXI | input library | Homo sapiens heart left ventricle tissue female adult (53 years) | Bradley Bernstein, Broad | released | |
| ENCSR035ELI | input library | Homo sapiens heart left ventricle tissue female adult (53 years) | Michael Snyder, Stanford | released |