Summary for ENCSR301HQS
doi:10.17989/ENCSR301HQS
Summary
- Status
- released
- Description
- Reference epigenome for human tibial nerve (53 year old female)
- Donor diversity
- single
- Assay
- whole-genome shotgun bisulfite sequencing, DNase-seq, RNA-seq, ChIP-seq
- Target
- H3K27me3, H3K4me1, H3K27ac, H3K36me3, POLR2A, CTCF, H3K9me3, H3K4me3
- Biosample summary
- Homo sapiens tibial nerve tissue female adult (53 years)
- Diseases
- Not reported
Attribution
ENCODE3 project
- Lab
- ENCODE Consortium
- Award
- U41HG006992 (J. Michael Cherry, Stanford)
- Project
- ENCODE
- External resources
- Tags
Experiments in ENCSR301HQS
Experiments
11 experiments
Accession | Assay | Target | Biosample summary | Lab | Status | Cart |
|---|---|---|---|---|---|---|
| ENCSR100TUY | DNase-seq | Homo sapiens tibial nerve tissue female adult (53 years) | John Stamatoyannopoulos, UW | archived | ||
| ENCSR157ZVP | ChIP-seq | H3K36me3 | Homo sapiens tibial nerve tissue female adult (53 years) | Bradley Bernstein, Broad | released | |
| ENCSR314SPW | ChIP-seq | H3K4me3 | Homo sapiens tibial nerve tissue female adult (53 years) | Bradley Bernstein, Broad | released | |
| ENCSR479GPU | ChIP-seq | H3K9me3 | Homo sapiens tibial nerve tissue female adult (53 years) | Bradley Bernstein, Broad | released | |
| ENCSR611YUJ | ChIP-seq | H3K27me3 | Homo sapiens tibial nerve tissue female adult (53 years) | Bradley Bernstein, Broad | released | |
| ENCSR752OCM | whole-genome shotgun bisulfite sequencing | Homo sapiens tibial nerve tissue female adult (53 years) | Richard Myers, HAIB | released | ||
| ENCSR771YJT | ChIP-seq | H3K27ac | Homo sapiens tibial nerve tissue female adult (53 years) | Bradley Bernstein, Broad | released | |
| ENCSR850RVA | ChIP-seq | H3K4me1 | Homo sapiens tibial nerve tissue female adult (53 years) | Bradley Bernstein, Broad | released | |
| ENCSR858QEL | RNA-seq | Homo sapiens tibial nerve tissue female adult (53 years) | Thomas Gingeras, CSHL | released | ||
| ENCSR875NEW | ChIP-seq | CTCF | Homo sapiens tibial nerve tissue female adult (53 years) | Bradley Bernstein, Broad | released | |
| ENCSR935XOT | ChIP-seq | POLR2A | Homo sapiens tibial nerve tissue female adult (53 years) | Michael Snyder, Stanford | released |
Control experiments
2 control experiments
Accession | Control type | Biosample summary | Lab | Status | Cart |
|---|---|---|---|---|---|
| ENCSR154SJE | input library | Homo sapiens tibial nerve tissue female adult (53 years) | Bradley Bernstein, Broad | released | |
| ENCSR522PLW | input library | Homo sapiens tibial nerve tissue female adult (53 years) | Michael Snyder, Stanford | released |