Summary for ENCSR199TFQ
doi:10.17989/ENCSR199TFQ
Summary
- Status
- released
- Description
- Reference epigenome for mouse MEL cell line cell line
- Donor diversity
- single
- Assay
- RNA-seq, DNase-seq, ChIP-seq, polyA plus RNA-seq
- Target
- POLR2A, H3K36me3, H3K4me3, CTCF, H3K27ac, H3K9ac, EP300, POLR2AphosphoS5, H3K9me3, H3K27me3, H3K4me1
- Biosample summary
- Mus musculus strain MEL MEL
- Diseases
- Not reported
Attribution
ENCODE3 project
- Lab
- ENCODE Consortium
- Award
- U41HG006992 (J. Michael Cherry, Stanford)
- Project
- ENCODE
- External resources
Experiments in ENCSR199TFQ
Experiments
14 experiments
Accession | Assay | Target | Biosample summary | Lab | Status | Cart |
|---|---|---|---|---|---|---|
| ENCSR000CWE | RNA-seq | Mus musculus strain MEL MEL | Michael Snyder, Stanford | released | ||
| ENCSR000ETQ | ChIP-seq | CTCF | Mus musculus strain MEL MEL | Michael Snyder, Stanford | released | |
| ENCSR000EUC | ChIP-seq | POLR2A | Mus musculus strain MEL MEL | Michael Snyder, Stanford | released | |
| ENCSR000DHZ | ChIP-seq | POLR2AphosphoS5 | Mus musculus strain MEL MEL | Ross Hardison, PennState | released | |
| ENCSR000ETV | ChIP-seq | EP300 | Mus musculus strain MEL MEL | Michael Snyder, Stanford | released | |
| ENCSR446MUM | DNase-seq | Mus musculus strain MEL MEL | John Stamatoyannopoulos, UW | archived | ||
| ENCSR000CEX | ChIP-seq | H3K4me3 | Mus musculus strain MEL MEL | Bing Ren, UCSD | released | |
| ENCSR000CEW | ChIP-seq | H3K4me1 | Mus musculus strain MEL MEL | Bing Ren, UCSD | released | |
| ENCSR000CEV | ChIP-seq | H3K27ac | Mus musculus strain MEL MEL | Bing Ren, UCSD | released | |
| ENCSR000CEU | ChIP-seq | H3K9ac | Mus musculus strain MEL MEL | Bing Ren, UCSD | released | |
| ENCSR000CES | ChIP-seq | H3K36me3 | Mus musculus strain MEL MEL | Bing Ren, UCSD | released | |
| ENCSR000CER | ChIP-seq | H3K27me3 | Mus musculus strain MEL MEL | Bing Ren, UCSD | released | |
| ENCSR000CID | polyA plus RNA-seq | Mus musculus strain MEL MEL | Ross Hardison, PennState | released | ||
| ENCSR000ADT | ChIP-seq | H3K9me3 | Mus musculus strain MEL MEL | Michael Snyder, Stanford | released |
Control experiments
4 control experiments
Accession | Control type | Biosample summary | Lab | Status | Cart |
|---|---|---|---|---|---|
| ENCSR000ADN | IgG | Mus musculus strain MEL MEL | Michael Snyder, Stanford | released | |
| ENCSR000EUF | IgG | Mus musculus strain MEL MEL | Michael Snyder, Stanford | released | |
| ENCSR000DIO | input library | Mus musculus strain MEL MEL | Ross Hardison, PennState | released | |
| ENCSR000CEY | input library | Mus musculus strain MEL MEL | Bing Ren, UCSD | released |