Summary for ENCSR191PVZ
doi:10.17989/ENCSR191PVZ
Summary
- Status
- released
- Description
- Reference epigenome for human upper lobe of left lung (51 year old female)
- Donor diversity
- single
- Assay
- whole-genome shotgun bisulfite sequencing, DNase-seq, small RNA-seq, ChIP-seq, RNA-seq
- Target
- H3K27me3, H3K4me1, H3K27ac, EP300, POLR2AphosphoS5, H3K36me3, POLR2A, CTCF, H3K9me3, H3K4me3
- Biosample summary
- Homo sapiens upper lobe of left lung tissue female adult (51 years)
- Diseases
- Not reported
Attribution
ENCODE3 project
- Lab
- ENCODE Consortium
- Award
- U41HG006992 (J. Michael Cherry, Stanford)
- Project
- ENCODE
- External resources
- Tags
Experiments in ENCSR191PVZ
Experiments
14 experiments
Accession | Assay | Target | Biosample summary | Lab | Status | Cart |
|---|---|---|---|---|---|---|
| ENCSR000MMZ | ChIP-seq | EP300 | Homo sapiens upper lobe of left lung tissue female adult (51 years) | Richard Myers, HAIB | released | |
| ENCSR238WIK | ChIP-seq | H3K4me1 | Homo sapiens upper lobe of left lung tissue female adult (51 years) | Bradley Bernstein, Broad | released | |
| ENCSR425RGZ | RNA-seq | Homo sapiens upper lobe of left lung tissue female adult (51 years) | Thomas Gingeras, CSHL | released | ||
| ENCSR429VWL | ChIP-seq | H3K4me3 | Homo sapiens upper lobe of left lung tissue female adult (51 years) | Bradley Bernstein, Broad | released | |
| ENCSR453MUW | ChIP-seq | H3K27ac | Homo sapiens upper lobe of left lung tissue female adult (51 years) | Bradley Bernstein, Broad | released | |
| ENCSR623YMO | ChIP-seq | H3K9me3 | Homo sapiens upper lobe of left lung tissue female adult (51 years) | Bradley Bernstein, Broad | released | |
| ENCSR642DSR | ChIP-seq | H3K36me3 | Homo sapiens upper lobe of left lung tissue female adult (51 years) | Bradley Bernstein, Broad | released | |
| ENCSR674VXR | whole-genome shotgun bisulfite sequencing | Homo sapiens upper lobe of left lung tissue female adult (51 years) | Richard Myers, HAIB | released | ||
| ENCSR706OFD | ChIP-seq | H3K27me3 | Homo sapiens upper lobe of left lung tissue female adult (51 years) | Bradley Bernstein, Broad | released | |
| ENCSR888OWU | ChIP-seq | POLR2A | Homo sapiens upper lobe of left lung tissue female adult (51 years) | Michael Snyder, Stanford | released | |
| ENCSR893MYW | ChIP-seq | POLR2AphosphoS5 | Homo sapiens upper lobe of left lung tissue female adult (51 years) | Richard Myers, HAIB | released | |
| ENCSR961FIG | small RNA-seq | Homo sapiens upper lobe of left lung tissue female adult (51 years) | Thomas Gingeras, CSHL | released | ||
| ENCSR799TJD | ChIP-seq | CTCF | Homo sapiens upper lobe of left lung tissue female adult (51 years) | Bradley Bernstein, Broad | released | |
| ENCSR323UTX | DNase-seq | Homo sapiens upper lobe of left lung tissue female adult (51 years) | John Stamatoyannopoulos, UW | released |
Control experiments
4 control experiments
Accession | Control type | Biosample summary | Lab | Status | Cart |
|---|---|---|---|---|---|
| ENCSR398EZJ | input library | Homo sapiens upper lobe of left lung tissue female adult (51 years) | Richard Myers, HAIB | released | |
| ENCSR750DLX | input library | Homo sapiens upper lobe of left lung tissue female adult (51 years) | Bradley Bernstein, Broad | released | |
| ENCSR061CNP | input library | Homo sapiens upper lobe of left lung tissue female adult (51 years) | Michael Snyder, Stanford | released | |
| ENCSR703OGS | input library | Homo sapiens upper lobe of left lung tissue female adult (51 years) | Richard Myers, HAIB | released |