Summary for ENCSR069QGS
doi:10.17989/ENCSR069QGS
Summary
- Status
- released
- Description
- Reference epigenome for human vagina (53 year old female)
- Donor diversity
- single
- Assay
- ChIP-seq, RNA-seq, small RNA-seq, microRNA-seq, DNase-seq
- Target
- POLR2AphosphoS5, H3K27ac, H3K36me3, H3K4me3, POLR2A, CTCF
- Biosample summary
- Homo sapiens vagina tissue female adult (53 years)
- Diseases
- Not reported
Attribution
ENCODE3 project
- Lab
- ENCODE Consortium
- Award
- U41HG006992 (J. Michael Cherry, Stanford)
- Project
- ENCODE
- External resources
- Tags
Experiments in ENCSR069QGS
Experiments
10 experiments
Accession | Assay | Target | Biosample summary | Lab | Status | Cart |
|---|---|---|---|---|---|---|
| ENCSR146LBD | RNA-seq | Homo sapiens vagina tissue female adult (53 years) | Thomas Gingeras, CSHL | released | ||
| ENCSR258UUX | ChIP-seq | H3K4me3 | Homo sapiens vagina tissue female adult (53 years) | Bradley Bernstein, Broad | released | |
| ENCSR401ORC | ChIP-seq | POLR2A | Homo sapiens vagina tissue female adult (53 years) | Michael Snyder, Stanford | released | |
| ENCSR437AYW | DNase-seq | Homo sapiens vagina tissue female adult (53 years) | John Stamatoyannopoulos, UW | released | ||
| ENCSR606TNN | ChIP-seq | CTCF | Homo sapiens vagina tissue female adult (53 years) | Michael Snyder, Stanford | released | |
| ENCSR674ESK | microRNA-seq | Homo sapiens vagina tissue female adult (53 years) | Ali Mortazavi, UCI | released | ||
| ENCSR718BTD | ChIP-seq | H3K27ac | Homo sapiens vagina tissue female adult (53 years) | Bradley Bernstein, Broad | released | |
| ENCSR812JEU | small RNA-seq | Homo sapiens vagina tissue female adult (53 years) | Thomas Gingeras, CSHL | released | ||
| ENCSR919UCY | ChIP-seq | POLR2AphosphoS5 | Homo sapiens vagina tissue female adult (53 years) | Richard Myers, HAIB | released | |
| ENCSR962MYX | ChIP-seq | H3K36me3 | Homo sapiens vagina tissue female adult (53 years) | Bradley Bernstein, Broad | released |
Control experiments
3 control experiments
Accession | Control type | Biosample summary | Lab | Status | Cart |
|---|---|---|---|---|---|
| ENCSR620XWM | input library | Homo sapiens vagina tissue female adult (53 years) | Bradley Bernstein, Broad | released | |
| ENCSR558QYH | input library | Homo sapiens vagina tissue female adult (53 years) | Michael Snyder, Stanford | released | |
| ENCSR475KZM | input library | Homo sapiens vagina tissue female adult (53 years) | Richard Myers, HAIB | released |