Summary for ENCSR046XHQ
doi:10.17989/ENCSR046XHQ
Supersedes ENCSR256OEH
Summary
- Status
- released
- Description
- Reference epigenome for human SK-N-SH cell line
- Donor diversity
- single
- Assay
- whole-genome shotgun bisulfite sequencing, DNase-seq, polyA plus RNA-seq, small RNA-seq, ChIP-seq
- Target
- H3K27me3, POLR2AphosphoS5, H3K27ac, EP300, H3K4me1, H3K36me3, CTCF, H3K9me3, H3K4me3
- Biosample summary
- Homo sapiens SK-N-SH
- Diseases
- Not reported
Attribution
ENCODE3 project
- Lab
- ENCODE Consortium
- Award
- U41HG006992 (J. Michael Cherry, Stanford)
- Project
- ENCODE
- External resources
Experiments in ENCSR046XHQ
Experiments
13 experiments
Accession | Assay | Target | Biosample summary | Lab | Status | Cart |
|---|---|---|---|---|---|---|
| ENCSR000BPA | ChIP-seq | POLR2AphosphoS5 | Homo sapiens SK-N-SH | Richard Myers, HAIB | released | |
| ENCSR000CTT | polyA plus RNA-seq | Homo sapiens SK-N-SH | Thomas Gingeras, CSHL | released | ||
| ENCSR000EHV | ChIP-seq | EP300 | Homo sapiens SK-N-SH | Michael Snyder, Stanford | released | |
| ENCSR000ELQ | DNase-seq | Homo sapiens SK-N-SH | Gregory Crawford, Duke | released | ||
| ENCSR145HNT | whole-genome shotgun bisulfite sequencing | Homo sapiens SK-N-SH | Richard Myers, HAIB | released | ||
| ENCSR541AMF | ChIP-seq | CTCF | Homo sapiens SK-N-SH | Bradley Bernstein, Broad | released | |
| ENCSR564IGJ | ChIP-seq | H3K27ac | Homo sapiens SK-N-SH | Bradley Bernstein, Broad | released | |
| ENCSR657OGA | ChIP-seq | H3K9me3 | Homo sapiens SK-N-SH | Bradley Bernstein, Broad | released | |
| ENCSR661BMA | ChIP-seq | H3K4me1 | Homo sapiens SK-N-SH | Bradley Bernstein, Broad | released | |
| ENCSR914QOK | ChIP-seq | H3K27me3 | Homo sapiens SK-N-SH | Bradley Bernstein, Broad | released | |
| ENCSR975GZA | ChIP-seq | H3K4me3 | Homo sapiens SK-N-SH | Bradley Bernstein, Broad | released | |
| ENCSR978CNH | ChIP-seq | H3K36me3 | Homo sapiens SK-N-SH | Bradley Bernstein, Broad | released | |
| ENCSR000CTJ | small RNA-seq | Homo sapiens SK-N-SH | Thomas Gingeras, CSHL | released |
Control experiments
3 control experiments
Accession | Control type | Biosample summary | Lab | Status | Cart |
|---|---|---|---|---|---|
| ENCSR000BPR | input library | Homo sapiens SK-N-SH | Richard Myers, HAIB | released | |
| ENCSR000EHU | IgG | Homo sapiens SK-N-SH | Michael Snyder, Stanford | released | |
| ENCSR185OHN | input library | Homo sapiens SK-N-SH | Bradley Bernstein, Broad | released |