Summary for ENCSR025UEI
doi:10.17989/ENCSR025UEI
Summary
- Status
- released
- Description
- Reference epigenome for human heart left ventricle (51 year old female)
- Donor diversity
- single
- Assay
- ATAC-seq, ChIP-seq, whole-genome shotgun bisulfite sequencing, RNA-seq, microRNA-seq
- Target
- H3K4me3, CTCF, POLR2A, H3K27me3, H3K27ac, H3K4me1, H3K36me3, H3K9me3
- Biosample summary
- Homo sapiens heart left ventricle tissue female adult (51 years)
- Diseases
- Not reported
Attribution
ENCODE3 project
- Lab
- ENCODE Consortium
- Award
- U41HG006992 (J. Michael Cherry, Stanford)
- Project
- ENCODE
- External resources
- Tags
Experiments in ENCSR025UEI
Experiments
12 experiments
Accession | Assay | Target | Biosample summary | Lab | Status | Cart |
|---|---|---|---|---|---|---|
| ENCSR117PYB | ATAC-seq | Homo sapiens heart left ventricle tissue female adult (51 years) | Michael Snyder, Stanford | released | ||
| ENCSR181ATL | ChIP-seq | H3K4me3 | Homo sapiens heart left ventricle tissue female adult (51 years) | Bradley Bernstein, Broad | released | |
| ENCSR307KDA | whole-genome shotgun bisulfite sequencing | Homo sapiens heart left ventricle tissue female adult (51 years) | Richard Myers, HAIB | released | ||
| ENCSR436QDU | RNA-seq | Homo sapiens heart left ventricle tissue female adult (51 years) | Thomas Gingeras, CSHL | released | ||
| ENCSR449FRQ | ChIP-seq | H3K4me1 | Homo sapiens heart left ventricle tissue female adult (51 years) | Bradley Bernstein, Broad | released | |
| ENCSR613PPL | ChIP-seq | H3K27me3 | Homo sapiens heart left ventricle tissue female adult (51 years) | Bradley Bernstein, Broad | released | |
| ENCSR699ZGH | ChIP-seq | POLR2A | Homo sapiens heart left ventricle tissue female adult (51 years) | Michael Snyder, Stanford | released | |
| ENCSR702OVJ | ChIP-seq | H3K27ac | Homo sapiens heart left ventricle tissue female adult (51 years) | Bradley Bernstein, Broad | released | |
| ENCSR705STY | microRNA-seq | Homo sapiens heart left ventricle tissue female adult (51 years) | Ali Mortazavi, UCI | released | ||
| ENCSR799KLF | ChIP-seq | H3K36me3 | Homo sapiens heart left ventricle tissue female adult (51 years) | Bradley Bernstein, Broad | released | |
| ENCSR803MVC | ChIP-seq | H3K9me3 | Homo sapiens heart left ventricle tissue female adult (51 years) | Bradley Bernstein, Broad | released | |
| ENCSR718SDR | ChIP-seq | CTCF | Homo sapiens heart left ventricle tissue female adult (51 years) | Bradley Bernstein, Broad | released |
Control experiments
2 control experiments
Accession | Control type | Biosample summary | Lab | Status | Cart |
|---|---|---|---|---|---|
| ENCSR178FVP | input library | Homo sapiens heart left ventricle tissue female adult (51 years) | Bradley Bernstein, Broad | released | |
| ENCSR689CZH | input library | Homo sapiens heart left ventricle tissue female adult (51 years) | Michael Snyder, Stanford | released |