Reference Epigenome Matrix

Project data from human tissue, cell line, primary cell, and in vitro differentiated cell biosamples organized as reference epigenomes following guidelines set out by IHEC.
       
Showing 176 results.
Assay
Biosample
polyA plus RNA-seqtotal RNA-seqsmall RNA-seqmicroRNA-seqmicroRNA countsRNA microarrayDNase-seqATAC-seqWGBSRRBSMeDIP-seqMRE-seqTF ChIP-seqCTCFPOLR2APOLR2AphosphoS5EP300Histone ChIP-seqH3K4me3H3K36me3H3K4me1H3K9me3H3K27me3H3K27acH3K9acH3K4me2H2AFZH3K79me2H4K20me1H3K79me1H4K8acH2BK12acH3K18acH3K23acH3K4acH2AK5acH2BK120acH2BK5acH3K14acH2BK15acH4K91acH3K9me1H2BK20acH3K56acH4K5acH3K23me2H2AK9acH3T11phH4K12ac
stomach
Search tissue, stomach for polyA plus RNA-seq Search tissue, stomach for total RNA-seq Search tissue, stomach for small RNA-seq Search tissue, stomach for DNase-seq Search tissue, stomach for ATAC-seq Search tissue, stomach for WGBS Search tissue, stomach for TF ChIP-seq, CTCF Search tissue, stomach for TF ChIP-seq, POLR2A Search tissue, stomach for TF ChIP-seq, POLR2AphosphoS5 Search tissue, stomach for TF ChIP-seq, EP300 Search tissue, stomach for Histone ChIP-seq, H3K4me3 Search tissue, stomach for Histone ChIP-seq, H3K36me3 Search tissue, stomach for Histone ChIP-seq, H3K4me1 Search tissue, stomach for Histone ChIP-seq, H3K9me3 Search tissue, stomach for Histone ChIP-seq, H3K27me3 Search tissue, stomach for Histone ChIP-seq, H3K27ac 
sigmoid colon
Search tissue, sigmoid colon for polyA plus RNA-seq Search tissue, sigmoid colon for total RNA-seq Search tissue, sigmoid colon for small RNA-seq Search tissue, sigmoid colon for DNase-seq Search tissue, sigmoid colon for ATAC-seq Search tissue, sigmoid colon for WGBS Search tissue, sigmoid colon for TF ChIP-seq, CTCF Search tissue, sigmoid colon for TF ChIP-seq, POLR2A Search tissue, sigmoid colon for TF ChIP-seq, POLR2AphosphoS5 Search tissue, sigmoid colon for TF ChIP-seq, EP300 Search tissue, sigmoid colon for Histone ChIP-seq, H3K4me3 Search tissue, sigmoid colon for Histone ChIP-seq, H3K36me3 Search tissue, sigmoid colon for Histone ChIP-seq, H3K4me1 Search tissue, sigmoid colon for Histone ChIP-seq, H3K9me3 Search tissue, sigmoid colon for Histone ChIP-seq, H3K27me3 Search tissue, sigmoid colon for Histone ChIP-seq, H3K27ac 
transverse colon
Search tissue, transverse colon for total RNA-seq Search tissue, transverse colon for small RNA-seq Search tissue, transverse colon for DNase-seq Search tissue, transverse colon for ATAC-seq Search tissue, transverse colon for WGBS Search tissue, transverse colon for TF ChIP-seq, CTCF Search tissue, transverse colon for TF ChIP-seq, POLR2A Search tissue, transverse colon for TF ChIP-seq, POLR2AphosphoS5 Search tissue, transverse colon for TF ChIP-seq, EP300 Search tissue, transverse colon for Histone ChIP-seq, H3K4me3 Search tissue, transverse colon for Histone ChIP-seq, H3K36me3 Search tissue, transverse colon for Histone ChIP-seq, H3K4me1 Search tissue, transverse colon for Histone ChIP-seq, H3K9me3 Search tissue, transverse colon for Histone ChIP-seq, H3K27me3 Search tissue, transverse colon for Histone ChIP-seq, H3K27ac 
upper lobe of left lung
Search tissue, upper lobe of left lung for total RNA-seq Search tissue, upper lobe of left lung for small RNA-seq Search tissue, upper lobe of left lung for DNase-seq Search tissue, upper lobe of left lung for WGBS Search tissue, upper lobe of left lung for TF ChIP-seq, CTCF Search tissue, upper lobe of left lung for TF ChIP-seq, POLR2A Search tissue, upper lobe of left lung for TF ChIP-seq, POLR2AphosphoS5 Search tissue, upper lobe of left lung for TF ChIP-seq, EP300 Search tissue, upper lobe of left lung for Histone ChIP-seq, H3K4me3 Search tissue, upper lobe of left lung for Histone ChIP-seq, H3K36me3 Search tissue, upper lobe of left lung for Histone ChIP-seq, H3K4me1 Search tissue, upper lobe of left lung for Histone ChIP-seq, H3K9me3 Search tissue, upper lobe of left lung for Histone ChIP-seq, H3K27me3 Search tissue, upper lobe of left lung for Histone ChIP-seq, H3K27ac 
spleen
Search tissue, spleen for polyA plus RNA-seq Search tissue, spleen for total RNA-seq Search tissue, spleen for small RNA-seq Search tissue, spleen for DNase-seq Search tissue, spleen for ATAC-seq Search tissue, spleen for WGBS Search tissue, spleen for TF ChIP-seq, CTCF Search tissue, spleen for TF ChIP-seq, POLR2A Search tissue, spleen for TF ChIP-seq, POLR2AphosphoS5 Search tissue, spleen for Histone ChIP-seq, H3K4me3 Search tissue, spleen for Histone ChIP-seq, H3K36me3 Search tissue, spleen for Histone ChIP-seq, H3K4me1 Search tissue, spleen for Histone ChIP-seq, H3K9me3 Search tissue, spleen for Histone ChIP-seq, H3K27me3 Search tissue, spleen for Histone ChIP-seq, H3K27ac 
adrenal gland
Search tissue, adrenal gland for total RNA-seq Search tissue, adrenal gland for small RNA-seq Search tissue, adrenal gland for microRNA-seq Search tissue, adrenal gland for DNase-seq Search tissue, adrenal gland for ATAC-seq Search tissue, adrenal gland for WGBS Search tissue, adrenal gland for TF ChIP-seq, CTCF Search tissue, adrenal gland for TF ChIP-seq, POLR2A Search tissue, adrenal gland for Histone ChIP-seq, H3K4me3 Search tissue, adrenal gland for Histone ChIP-seq, H3K36me3 Search tissue, adrenal gland for Histone ChIP-seq, H3K4me1 Search tissue, adrenal gland for Histone ChIP-seq, H3K9me3 Search tissue, adrenal gland for Histone ChIP-seq, H3K27me3 Search tissue, adrenal gland for Histone ChIP-seq, H3K27ac 
thyroid gland
Search tissue, thyroid gland for total RNA-seq Search tissue, thyroid gland for small RNA-seq Search tissue, thyroid gland for microRNA-seq Search tissue, thyroid gland for DNase-seq Search tissue, thyroid gland for ATAC-seq Search tissue, thyroid gland for WGBS Search tissue, thyroid gland for TF ChIP-seq, CTCF Search tissue, thyroid gland for TF ChIP-seq, POLR2A Search tissue, thyroid gland for Histone ChIP-seq, H3K4me3 Search tissue, thyroid gland for Histone ChIP-seq, H3K36me3 Search tissue, thyroid gland for Histone ChIP-seq, H3K4me1 Search tissue, thyroid gland for Histone ChIP-seq, H3K9me3 Search tissue, thyroid gland for Histone ChIP-seq, H3K27me3 Search tissue, thyroid gland for Histone ChIP-seq, H3K27ac 
esophagus muscularis mucosa
Search tissue, esophagus muscularis mucosa for total RNA-seq Search tissue, esophagus muscularis mucosa for small RNA-seq Search tissue, esophagus muscularis mucosa for DNase-seq Search tissue, esophagus muscularis mucosa for ATAC-seq Search tissue, esophagus muscularis mucosa for WGBS Search tissue, esophagus muscularis mucosa for TF ChIP-seq, CTCF Search tissue, esophagus muscularis mucosa for TF ChIP-seq, POLR2A Search tissue, esophagus muscularis mucosa for TF ChIP-seq, POLR2AphosphoS5 Search tissue, esophagus muscularis mucosa for TF ChIP-seq, EP300 Search tissue, esophagus muscularis mucosa for Histone ChIP-seq, H3K4me3 Search tissue, esophagus muscularis mucosa for Histone ChIP-seq, H3K36me3 Search tissue, esophagus muscularis mucosa for Histone ChIP-seq, H3K4me1 Search tissue, esophagus muscularis mucosa for Histone ChIP-seq, H3K9me3 Search tissue, esophagus muscularis mucosa for Histone ChIP-seq, H3K27me3 Search tissue, esophagus muscularis mucosa for Histone ChIP-seq, H3K27ac 
gastrocnemius medialis
Search tissue, gastrocnemius medialis for total RNA-seq Search tissue, gastrocnemius medialis for microRNA-seq Search tissue, gastrocnemius medialis for DNase-seq Search tissue, gastrocnemius medialis for ATAC-seq Search tissue, gastrocnemius medialis for TF ChIP-seq, CTCF Search tissue, gastrocnemius medialis for TF ChIP-seq, POLR2A Search tissue, gastrocnemius medialis for Histone ChIP-seq, H3K4me3 Search tissue, gastrocnemius medialis for Histone ChIP-seq, H3K36me3 Search tissue, gastrocnemius medialis for Histone ChIP-seq, H3K4me1 Search tissue, gastrocnemius medialis for Histone ChIP-seq, H3K9me3 Search tissue, gastrocnemius medialis for Histone ChIP-seq, H3K27me3 Search tissue, gastrocnemius medialis for Histone ChIP-seq, H3K27ac 
tibial nerve
Search tissue, tibial nerve for total RNA-seq Search tissue, tibial nerve for small RNA-seq Search tissue, tibial nerve for DNase-seq Search tissue, tibial nerve for ATAC-seq Search tissue, tibial nerve for WGBS Search tissue, tibial nerve for TF ChIP-seq, CTCF Search tissue, tibial nerve for TF ChIP-seq, POLR2A Search tissue, tibial nerve for TF ChIP-seq, EP300 Search tissue, tibial nerve for Histone ChIP-seq, H3K4me3 Search tissue, tibial nerve for Histone ChIP-seq, H3K36me3 Search tissue, tibial nerve for Histone ChIP-seq, H3K4me1 Search tissue, tibial nerve for Histone ChIP-seq, H3K9me3 Search tissue, tibial nerve for Histone ChIP-seq, H3K27me3 Search tissue, tibial nerve for Histone ChIP-seq, H3K27ac 
H1
Search cell line, H1 for polyA plus RNA-seq Search cell line, H1 for small RNA-seq Search cell line, H1 for microRNA-seq Search cell line, H1 for DNase-seq Search cell line, H1 for WGBS Search cell line, H1 for RRBS Search cell line, H1 for MeDIP-seq Search cell line, H1 for MRE-seq Search cell line, H1 for TF ChIP-seq, CTCF Search cell line, H1 for TF ChIP-seq, POLR2A Search cell line, H1 for TF ChIP-seq, POLR2AphosphoS5 Search cell line, H1 for TF ChIP-seq, EP300 Search cell line, H1 for Histone ChIP-seq, H3K4me3 Search cell line, H1 for Histone ChIP-seq, H3K36me3 Search cell line, H1 for Histone ChIP-seq, H3K4me1 Search cell line, H1 for Histone ChIP-seq, H3K9me3 Search cell line, H1 for Histone ChIP-seq, H3K27me3 Search cell line, H1 for Histone ChIP-seq, H3K27ac Search cell line, H1 for Histone ChIP-seq, H3K9ac Search cell line, H1 for Histone ChIP-seq, H3K4me2 Search cell line, H1 for Histone ChIP-seq, H2AFZ Search cell line, H1 for Histone ChIP-seq, H3K79me2 Search cell line, H1 for Histone ChIP-seq, H4K20me1 Search cell line, H1 for Histone ChIP-seq, H3K79me1 Search cell line, H1 for Histone ChIP-seq, H4K8ac Search cell line, H1 for Histone ChIP-seq, H2BK12ac Search cell line, H1 for Histone ChIP-seq, H3K18ac Search cell line, H1 for Histone ChIP-seq, H3K23ac Search cell line, H1 for Histone ChIP-seq, H3K4ac Search cell line, H1 for Histone ChIP-seq, H2AK5ac Search cell line, H1 for Histone ChIP-seq, H2BK120ac Search cell line, H1 for Histone ChIP-seq, H2BK5ac Search cell line, H1 for Histone ChIP-seq, H3K14ac Search cell line, H1 for Histone ChIP-seq, H2BK15ac Search cell line, H1 for Histone ChIP-seq, H4K91ac Search cell line, H1 for Histone ChIP-seq, H2BK20ac Search cell line, H1 for Histone ChIP-seq, H3K56ac Search cell line, H1 for Histone ChIP-seq, H4K5ac Search cell line, H1 for Histone ChIP-seq, H3K23me2 
IMR-90
Search cell line, IMR-90 for RNA microarray Search cell line, IMR-90 for DNase-seq Search cell line, IMR-90 for WGBS Search cell line, IMR-90 for Histone ChIP-seq, H3K4me3 Search cell line, IMR-90 for Histone ChIP-seq, H3K36me3 Search cell line, IMR-90 for Histone ChIP-seq, H3K4me1 Search cell line, IMR-90 for Histone ChIP-seq, H3K9me3 Search cell line, IMR-90 for Histone ChIP-seq, H3K27me3 Search cell line, IMR-90 for Histone ChIP-seq, H3K27ac Search cell line, IMR-90 for Histone ChIP-seq, H3K9ac Search cell line, IMR-90 for Histone ChIP-seq, H3K4me2 Search cell line, IMR-90 for Histone ChIP-seq, H2AFZ Search cell line, IMR-90 for Histone ChIP-seq, H3K79me2 Search cell line, IMR-90 for Histone ChIP-seq, H4K20me1 Search cell line, IMR-90 for Histone ChIP-seq, H3K79me1 Search cell line, IMR-90 for Histone ChIP-seq, H4K8ac Search cell line, IMR-90 for Histone ChIP-seq, H2BK12ac Search cell line, IMR-90 for Histone ChIP-seq, H3K18ac Search cell line, IMR-90 for Histone ChIP-seq, H3K23ac Search cell line, IMR-90 for Histone ChIP-seq, H3K4ac Search cell line, IMR-90 for Histone ChIP-seq, H2AK5ac Search cell line, IMR-90 for Histone ChIP-seq, H2BK120ac Search cell line, IMR-90 for Histone ChIP-seq, H2BK5ac Search cell line, IMR-90 for Histone ChIP-seq, H3K14ac Search cell line, IMR-90 for Histone ChIP-seq, H2BK15ac Search cell line, IMR-90 for Histone ChIP-seq, H4K91ac Search cell line, IMR-90 for Histone ChIP-seq, H3K9me1 Search cell line, IMR-90 for Histone ChIP-seq, H2BK20ac Search cell line, IMR-90 for Histone ChIP-seq, H3K56ac Search cell line, IMR-90 for Histone ChIP-seq, H4K5ac Search cell line, IMR-90 for Histone ChIP-seq, H2AK9ac 
H9
Search cell line, H9 for DNase-seq Search cell line, H9 for WGBS Search cell line, H9 for RRBS Search cell line, H9 for Histone ChIP-seq, H3K4me3 Search cell line, H9 for Histone ChIP-seq, H3K36me3 Search cell line, H9 for Histone ChIP-seq, H3K4me1 Search cell line, H9 for Histone ChIP-seq, H3K9me3 Search cell line, H9 for Histone ChIP-seq, H3K27me3 Search cell line, H9 for Histone ChIP-seq, H3K27ac Search cell line, H9 for Histone ChIP-seq, H3K9ac Search cell line, H9 for Histone ChIP-seq, H3K4me2 Search cell line, H9 for Histone ChIP-seq, H2AFZ Search cell line, H9 for Histone ChIP-seq, H3K79me2 Search cell line, H9 for Histone ChIP-seq, H4K20me1 Search cell line, H9 for Histone ChIP-seq, H3K79me1 Search cell line, H9 for Histone ChIP-seq, H4K8ac Search cell line, H9 for Histone ChIP-seq, H2BK12ac Search cell line, H9 for Histone ChIP-seq, H3K18ac Search cell line, H9 for Histone ChIP-seq, H3K23ac Search cell line, H9 for Histone ChIP-seq, H3K4ac Search cell line, H9 for Histone ChIP-seq, H2AK5ac Search cell line, H9 for Histone ChIP-seq, H2BK120ac Search cell line, H9 for Histone ChIP-seq, H2BK5ac Search cell line, H9 for Histone ChIP-seq, H3K14ac Search cell line, H9 for Histone ChIP-seq, H2BK15ac Search cell line, H9 for Histone ChIP-seq, H4K91ac Search cell line, H9 for Histone ChIP-seq, H2BK20ac Search cell line, H9 for Histone ChIP-seq, H3K56ac Search cell line, H9 for Histone ChIP-seq, H4K5ac Search cell line, H9 for Histone ChIP-seq, H3K23me2 Search cell line, H9 for Histone ChIP-seq, H3T11ph 
A549
Search cell line, A549 for polyA plus RNA-seq Search cell line, A549 for small RNA-seq Search cell line, A549 for DNase-seq Search cell line, A549 for WGBS Search cell line, A549 for RRBS Search cell line, A549 for TF ChIP-seq, CTCF Search cell line, A549 for TF ChIP-seq, POLR2A Search cell line, A549 for TF ChIP-seq, EP300 Search cell line, A549 for Histone ChIP-seq, H3K4me3 Search cell line, A549 for Histone ChIP-seq, H3K36me3 Search cell line, A549 for Histone ChIP-seq, H3K4me1 Search cell line, A549 for Histone ChIP-seq, H3K9me3 Search cell line, A549 for Histone ChIP-seq, H3K27me3 Search cell line, A549 for Histone ChIP-seq, H3K27ac Search cell line, A549 for Histone ChIP-seq, H3K9ac Search cell line, A549 for Histone ChIP-seq, H3K4me2 Search cell line, A549 for Histone ChIP-seq, H2AFZ Search cell line, A549 for Histone ChIP-seq, H3K79me2 Search cell line, A549 for Histone ChIP-seq, H4K20me1 
SK-N-SH
Search cell line, SK-N-SH for polyA plus RNA-seq Search cell line, SK-N-SH for small RNA-seq Search cell line, SK-N-SH for DNase-seq Search cell line, SK-N-SH for WGBS Search cell line, SK-N-SH for RRBS Search cell line, SK-N-SH for TF ChIP-seq, CTCF Search cell line, SK-N-SH for TF ChIP-seq, POLR2AphosphoS5 Search cell line, SK-N-SH for TF ChIP-seq, EP300 Search cell line, SK-N-SH for Histone ChIP-seq, H3K4me3 Search cell line, SK-N-SH for Histone ChIP-seq, H3K36me3 Search cell line, SK-N-SH for Histone ChIP-seq, H3K4me1 Search cell line, SK-N-SH for Histone ChIP-seq, H3K9me3 Search cell line, SK-N-SH for Histone ChIP-seq, H3K27me3 </