Small RNA-seq single-end pipeline
- Status
- released
- Title
- Small RNA-seq single-end pipeline
- Assays
- RNA-seq, microRNA-seq, small RNA-seq
- Description
- ENCODE DAC/DCC run pipeline for small RNA-seq taking single-ended fastq input and producing stranded signals. If your libraries are generated from rRNA-depleted total RNA libraries that are size-selected to be shorter than approximately 200 nucleotides. References used for this pipeline are listed in the pipeline overview document.
- Lab
- ENCODE Processing Pipeline
- Award PI
- J. Michael Cherry, Stanford
- Pipeline standards
- Small RNA-seq Data Standards
Pipeline schematic
Documents
pipeline protocol
Description: Small RNA-seq pipeline: Includes overview and references for the pipeline
- Submitted by
- Kathrina Onate
- Lab
- J. Michael Cherry, Stanford
- Grant
- ENCODE