Small RNA-seq single-end pipeline

  • Status: active
Title
Small RNA-seq single-end pipeline
Assays
RNA-seq
Description
ENCODE DAC/DCC run pipeline for small RNA-seq taking single-ended fastq input and producing stranded signals. If your libraries are generated from rRNA-depleted total RNA libraries that are size-selected to be shorter than approximately 200 nucleotides. References used for this pipeline are listed in the pipeline overview document.
Lab
ENCODE Processing Pipeline

Pipeline schematic

Documents

pipeline protocol
Description: Small RNA-seq pipeline: Includes overview and references for the pipeline
Submitted by
Kathrina Onate
Lab
J. Michael Cherry, Stanford
Grant
ENCODE