Small RNA-seq single-end pipeline

Status
released
Title
Small RNA-seq single-end pipeline
Assays
RNA-seq, microRNA-seq
Description
ENCODE DAC/DCC run pipeline for small RNA-seq taking single-ended fastq input and producing stranded signals. If your libraries are generated from rRNA-depleted total RNA libraries that are size-selected to be shorter than approximately 200 nucleotides. References used for this pipeline are listed in the pipeline overview document.
Lab
ENCODE Processing Pipeline
Award PI
J. Michael Cherry, Stanford

Pipeline schematic

Documents

pipeline protocol
Description: Small RNA-seq pipeline: Includes overview and references for the pipeline
Submitted by
Kathrina Onate
Lab
J. Michael Cherry, Stanford
Grant
ENCODE