Histone ChIP-seq

  • Status: active
Title
Histone ChIP-seq
Assays
ChIP-seq
Description
ENCODE defined analysis pipeline for histone ChIP-seq. The pipeline takes as inputs both ChIP-seq reads (from paired-end stranded or single-end unstranded libraries) and a set of reference fastas found at https://www.encodeproject.org/data-standards/reference-sequences/. The reference used depends on the assembly.
Lab
ENCODE Processing Pipeline
Award PI
J. Michael Cherry, Stanford

Pipeline schematic

Documents

pipeline protocol
Description: ChIP pipeline: Details for both histone and transcription factor
Submitted by
Kathrina Onate
Lab
J. Michael Cherry, Stanford