Histone ChIP-seq

Status: released
Title: Histone ChIP-seq
Assays: ChIP-seq
Description: ENCODE defined analysis pipeline for histone ChIP-seq. The pipeline takes as inputs both ChIP-seq reads (from paired-end stranded or single-end unstranded libraries) and a set of reference fastas found at https://www.encodeproject.org/data-standards/reference-sequences/. The reference used depends on the assembly.
Lab: ENCODE Processing Pipeline
Award PI: J. Michael Cherry, Stanford
Source: https://github.com/ENCODE-DCC/chip-seq-pipeline
Pipeline standards: Histone ChIP-seq Data Standards and Processing Pipeline

Description: ChIP pipeline: Details for both histone and transcription factor