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Summary for ENCSR979QQN

Summary

Status
released
Description
Functional characterization series for the gene target ERP29.
Donor diversity
single
Assay
Flow-FISH CRISPR screen
Biosample summary
Homo sapiens K562 genetically modified (insertion) using transduction, using CRISPRi (sgRNA) for chr12:110726151-112325750
Diseases
Not reported
Treatments
doxycycline
Elements references
Tiling modality
full tiling

Attribution

ENCODE4 project
Lab
Pardis Sabeti, Broad
Award
UM1HG009435 (Pardis Sabeti, Broad)
Project
ENCODE
Aliases
pardis-sabeti:ERP29_series_ERP29
External resources
None submitted

Experiments in ENCSR979QQN

Experiments
2 experiments
Accession
Assay
Examined loci
Biosample summary
Lab
Status
Cart
ENCSR538TGDFlow-FISH CRISPR screenERP29 (90-100%)Homo sapiens K562 genetically modified (insertion) using transduction, using CRISPRi (sgRNA) for chr12:110726151-112325750Pardis Sabeti, Broad
released
ENCSR129ISTFlow-FISH CRISPR screenERP29 (0-10%)Homo sapiens K562 genetically modified (insertion) using transduction, using CRISPRi (sgRNA) for chr12:110726151-112325750Pardis Sabeti, Broad
released
Control experiments
2 control experiments
Accession
Control type
Biosample summary
Lab
Status
Cart
ENCSR591JERcontrolHomo sapiens K562 genetically modified (insertion) using transduction, using CRISPRi (sgRNA) for chr12:110726151-112325750Pardis Sabeti, Broad
released
ENCSR418FSNcontrolPardis Sabeti, Broad
released

Files

Filter files

File format
Output type
Replicates
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Displaying 4 of 4 files

Lab custom GRCh38 (ENCAN436JUA) processed data
(4 Files)   

Accession
File type
Output type
Genome assembly
Date added
File size
File status
ENCFF813GCK
bed CRISPR element quantificationselement quantificationsGRCh382021-05-13226 B
released
ENCFF079PDD
bigWigperturbation signalGRCh382021-05-13913 kB
released
ENCFF184LYJ
bigWigperturbation signalGRCh382021-05-13908 kB
released
ENCFF726JKU
bigInteractelement gene interactions signalGRCh382021-05-1320.7 kB
released