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Summary for ENCSR496MZF

Summary

Status
released
Description
Functional characterization series for the gene target PVT1.
Donor diversity
single
Assay
Flow-FISH CRISPR screen
Biosample summary
Homo sapiens K562 genetically modified (insertion) using transduction, using CRISPRi (sgRNA) for chr8:126736096-128735246
Diseases
Not reported
Treatments
doxycycline
Elements references
Tiling modality
full tiling

Attribution

ENCODE4 project
Lab
Pardis Sabeti, Broad
Award
UM1HG009435 (Pardis Sabeti, Broad)
Project
ENCODE
Aliases
pardis-sabeti:PVT1_series_MYC
External resources
None submitted

Experiments in ENCSR496MZF

Experiments
2 experiments
Accession
Assay
Examined loci
Biosample summary
Lab
Status
Cart
ENCSR913DHPFlow-FISH CRISPR screenPVT1 (90-100%)Homo sapiens K562 genetically modified (insertion) using transduction, using CRISPRi (sgRNA) for chr8:126736096-128735246Pardis Sabeti, Broad
released
ENCSR951RMFFlow-FISH CRISPR screenPVT1 (0-10%)Homo sapiens K562 genetically modified (insertion) using transduction, using CRISPRi (sgRNA) for chr8:126736096-128735246Pardis Sabeti, Broad
released
Control experiments
2 control experiments
Accession
Control type
Biosample summary
Lab
Status
Cart
ENCSR311XHAcontrolHomo sapiens K562 genetically modified (insertion) using transduction, using CRISPRi (sgRNA) for chr8:126736096-128735246Pardis Sabeti, Broad
released
ENCSR782RDDcontrolPardis Sabeti, Broad
released

Files

Filter files

File format
Output type
Replicates
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Displaying 4 of 4 files

Lab custom GRCh38 (ENCAN805MFR) processed data
(4 Files)   

Accession
File type
Output type
Genome assembly
Date added
File size
File status
ENCFF005DTR
bed CRISPR element quantificationselement quantificationsGRCh382021-05-13429 B
released
ENCFF298GWM
bigWigperturbation signalGRCh382021-05-13811 kB
released
ENCFF191XOT
bigWigperturbation signalGRCh382021-05-13809 kB
released
ENCFF853CKU
bigInteractelement gene interactions signalGRCh382021-05-1320.9 kB
released