1. Datasets
  2. Series

Summary for ENCSR157WAN

Summary

Status
released
Description
Functional characterization series for the gene target CD164.
Donor diversity
single
Assay
Flow-FISH CRISPR screen
Biosample summary
Homo sapiens K562 genetically modified (insertion) using transduction, using CRISPRi (sgRNA) for chr6:108840570-109828820
Diseases
Not reported
Treatments
doxycycline
Elements references
Tiling modality
full tiling

Attribution

ENCODE4 project
Lab
Pardis Sabeti, Broad
Award
UM1HG009435 (Pardis Sabeti, Broad)
Project
ENCODE
Aliases
pardis-sabeti:CD164_series_CD164
External resources
None submitted

Experiments in ENCSR157WAN

Experiments
2 experiments
Accession
Assay
Examined loci
Biosample summary
Lab
Status
Cart
ENCSR104CUHFlow-FISH CRISPR screenCD164 (90-100%)Homo sapiens K562 genetically modified (insertion) using transduction, using CRISPRi (sgRNA) for chr6:108840570-109828820Pardis Sabeti, Broad
released
ENCSR497BIBFlow-FISH CRISPR screenCD164 (0-10%)Homo sapiens K562 genetically modified (insertion) using transduction, using CRISPRi (sgRNA) for chr6:108840570-109828820Pardis Sabeti, Broad
released
Control experiments
2 control experiments
Accession
Control type
Biosample summary
Lab
Status
Cart
ENCSR804HRDcontrolHomo sapiens K562 genetically modified (insertion) using transduction, using CRISPRi (sgRNA) for chr6:108840570-109828820Pardis Sabeti, Broad
released
ENCSR975HOYcontrolPardis Sabeti, Broad
released

Files

Filter files

File format
Output type
Replicates
|
Displaying 4 of 4 files

Lab custom GRCh38 (ENCAN099IAE) processed data
(4 Files)   

Accession
File type
Output type
Genome assembly
Date added
File size
File status
ENCFF270LYK
bed CRISPR element quantificationselement quantificationsGRCh382021-05-13245 B
released
ENCFF186XBW
bigWigperturbation signalGRCh382021-05-13883 kB
released
ENCFF786CHF
bigWigperturbation signalGRCh382021-05-13879 kB
released
ENCFF109CWP
bigInteractelement gene interactions signalGRCh382021-05-1320.7 kB
released