Functional Characterization Experiment summary for ENCSR658QEA
doi:10.17989/ENCSR658QEA
Summary
- Status
- released
- Assay
- pooled clone sequencing
- Control type
- control
- Biosample Type
- cloning host
- Description
- Elements cloned into the lentiMPRA vector upstream of a minimal promoter, with barcode located in the 5' UTR of the reporter. Elements test K562/Hepg2 enhancers as a pilot library to a larger-scale experiment.
- Nucleic acid type
- DNA
- Size range
- 150-250
- Fragmentation methods
- chemical (Illumina TruSeq)
- Platform
- Illumina MiSeq, Illumina NextSeq 500
- Elements references
Attribution
ENCODE4 project
- Lab
- Nadav Ahituv, UCSF
- Award
- UM1HG009408 (Jay Shendure, UW)
- Project
- ENCODE
- Aliases
- nadav-ahituv:Pilot_7500-mpra-pooled-clone_k562
- Date submitted
- February 14, 2020
- Date released
- September 1, 2021
Isogenic replicates
Isogenic replicate | Technical replicate | Summary | Biosample | Library |
|---|---|---|---|---|
| 1 | 1 | ENCLB274WWQ |