Functional Characterization Experiment summary for ENCSR646KIT
doi:10.17989/ENCSR646KIT
Summary
- Status
- released
- Assay
- STARR-seq
- Biosample summary
- Homo sapiens A549 genetically modified (episome) using transient transfection treated with 100 nM dexamethasone (agonist) for 1 hour
- Biosample Type
- cell line
- Replication type
- isogenic
- Treatments
- 100 nM dexamethasone (CHEBI:41879) for 1 hour
- Nucleic acid type
- RNA
- Library starting quantity
- 10µg
- Size range
- >300
- Strand specificity
- unstranded
- Platform
- Illumina HiSeq 4000
- Controls
Attribution
Genomics of Gene Regulation Project
- Lab
- Tim Reddy, Duke
- Award
- U01HG007900 (Tim Reddy, Duke)
- Project
- GGR
- External resources
- Aliases
- tim-reddy:ggr-starrseq-output-dex-01h
- Date submitted
- November 7, 2019
- Date released
- December 2, 2019
Isogenic replicates
Isogenic replicate | Technical replicate | Summary | Biosample | Modifications | Library |
|---|---|---|---|---|---|
| 3 | 1 | Homo sapiens A549 cell line genetically modified (episome) using transient transfection treated with 100 nM dexamethasone (agonist) for 1 hour | ENCBS774UVV | ENCGM086KMS | ENCLB582PXP |
| 5 | 1 | Homo sapiens A549 cell line genetically modified (episome) using transient transfection treated with 100 nM dexamethasone (agonist) for 1 hour | ENCBS907VRC | ENCGM086KMS | ENCLB160DAK |
| 1 | 1 | Homo sapiens A549 cell line genetically modified (episome) using transient transfection treated with 100 nM dexamethasone (agonist) for 1 hour | ENCBS753LMC | ENCGM086KMS | ENCLB544FEW |
| 2 | 1 | Homo sapiens A549 cell line genetically modified (episome) using transient transfection treated with 100 nM dexamethasone (agonist) for 1 hour | ENCBS127QQR | ENCGM086KMS | ENCLB565YCR |
| 4 | 1 | Homo sapiens A549 cell line genetically modified (episome) using transient transfection treated with 100 nM dexamethasone (agonist) for 1 hour | ENCBS296PPI | ENCGM086KMS | ENCLB479MWE |