Functional Characterization Experiment summary for ENCSR087EPN
doi:10.17989/ENCSR087EPN
Summary
- Status
- released
- Assay
- proliferation CRISPR screen
- Biosample summary
- Homo sapiens HCT116, 14 days post-nucleic acid delivery time genetically modified (insertion) using transduction, using CRISPRi (pgRNA)
- Biosample Type
- cell line
- Perturbation type
- CRISPRi
- Tiling modality
- peak tiling
- Replication type
- isogenic
- Nucleic acid type
- RNA
- Size range
- 710-720
- Strand specificity
- unstranded
- Platform
- Illumina HiSeq 4000
- Controls
- Elements references
Attribution
ENCODE4 project
- Lab
- Bing Ren, UCSD
- Award
- UM1HG009402 (Yin Shen, UCSF)
- Project
- ENCODE
- Aliases
- bing-ren:BC83E_HCT116_clone24_D14
- Date released
- June 30, 2022
- Functional Characterization Series
- ENCSR924MQG
Isogenic replicates
Isogenic replicate | Technical replicate | Summary | Biosample | Modifications | Library |
|---|---|---|---|---|---|
| 1 | 1 | Homo sapiens HCT116 cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (pgRNA), 14 days post-nucleic acid delivery time | ENCBS671PTK | ENCGM980KVV, ENCGM906JKR | ENCLB747AAC |
| 2 | 1 | Homo sapiens HCT116 cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (pgRNA), 14 days post-nucleic acid delivery time | ENCBS941WDJ | ENCGM980KVV, ENCGM906JKR | ENCLB273FCO |