Functional Characterization Experiment summary for ENCSR036YOP
doi:10.17989/ENCSR036YOP
Summary
- Status
- released
- Assay
- STARR-seq (Control STARR-seq)
- Control type
- control
- Biosample summary
- Homo sapiens K562 genetically modified (episome) using transient transfection
- Biosample Type
- cell line
- Replication type
- isogenic
- Description
- Single human gDNA fragments and concatenated pairs of such fragments were tested for their enhancer activity with eSTARR-seq. The transfected plasmids (post-transfection DNA sample) were sequenced and reported here.
- Nucleic acid type
- DNA
- Size range
- 250-650
- Fragmentation methods
- none
- Platform
- Illumina MiSeq
- Elements references
Attribution
ENCODE4 project
- Lab
- Haiyuan Yu, Cornell
- Award
- UM1HG009393 (John Lis, Cornell)
- Project
- ENCODE
- Aliases
- john-lis:eSTARR2_MYC_DNA
- Date submitted
- July 8, 2020
- Date released
- July 13, 2020
Isogenic replicates
Isogenic replicate | Technical replicate | Summary | Biosample | Modifications | Library |
|---|---|---|---|---|---|
| 2 | 1 | Homo sapiens K562 cell line genetically modified (episome) using transient transfection | ENCBS623SPP | ENCGM724VKO | ENCLB237YPJ |
| 3 | 1 | Homo sapiens K562 cell line genetically modified (episome) using transient transfection | ENCBS575ATB | ENCGM724VKO | ENCLB384HAA |
| 1 | 1 | Homo sapiens K562 cell line genetically modified (episome) using transient transfection | ENCBS601BEQ | ENCGM724VKO | ENCLB726IWS |