Functional Characterization Experiment summary for ENCSR004TXD

doi:10.17989/ENCSR004TXD

Summary

Status
released
Assay
FACS CRISPR screen
Biosample summary
Mus musculus F123 genetically modified (insertion) using CRISPR (sgRNA) targeting M. musculus Sox2, (insertion) using transduction, using CRISPR cutting (sgRNA) for Sox2 locus
Biosample Type
cell line
Perturbation type
CRISPR cutting
Tiling modality
peak tiling
Examined loci
Sox2 (1st percentile)
CRISPR screen readout
endogenous protein Sort-seq
Replication type
isogenic
Nucleic acid type
DNA
Controls
Elements references
Elements cloning
ENCSR919NIR

Attribution

ENCODE4 project
Lab
Yin Shen, UCSF
Award
UM1HG009402 (Yin Shen, UCSF)
Project
ENCODE
Aliases
yin-shen:Low eGFP sorted cells assay_Sox2
Date submitted
July 30, 2020
Date released
August 7, 2020
Functional Characterization Series
ENCSR984EUJ 

Isogenic replicates

Isogenic replicate
Technical replicate
Summary
Biosample
Modifications
Library
11Mus musculus F123 cell line genetically modified (insertion) using CRISPR (sgRNA) targeting M. musculus Sox2, genetically modified (insertion) using transduction, genetically modified using CRISPR cutting (sgRNA)ENCBS766NUPENCGM221OOR, ENCGM710YTX, ENCGM168QBGENCLB885SCY
21Mus musculus F123 cell line genetically modified (insertion) using CRISPR (sgRNA) targeting M. musculus Sox2, genetically modified (insertion) using transduction, genetically modified using CRISPR cutting (sgRNA)ENCBS320GQIENCGM221OOR, ENCGM710YTX, ENCGM168QBGENCLB955RIE