Experiment summary for ENCSR971GPJ
doi:10.17989/ENCSR971GPJ
Summary
- Status
- released
- Assay
- RNA-seq (total RNA-seq)
- Biosample summary
- Homo sapiens HT-29
- Biosample Type
- cell line
- Replication type
- isogenic
- Description
- The libraries contained in this experiment come from independent growths of cell line HT-29, a colorectal adenocarcinoma from a 44 year old female. They are stranded PE101 Illumina Hi-Seq libraries from rRNA-depleted Total RNA > 200 nucleotides in size.
- Nucleic acid type
- RNA
- Depleted in
- rRNA
- Size range
- >200
- Fragmentation methods
- shearing (Covaris generic)
- Size selection method
- other
- Strand specificity
- Strand-specific (reverse)
- Spike-ins datasets
- ENCSR156CIL
- Platform
- Illumina HiSeq 2000
Attribution
ENCODE3 project
- Lab
- Thomas Gingeras, CSHL
- Award
- U54HG007004 (Thomas Gingeras, CSHL)
- Project
- ENCODE
- External resources
- References
- Date submitted
- June 17, 2014
- Date released
- June 30, 2014
- Tags
Isogenic replicates
Isogenic replicate | Technical replicate | Summary | Biosample | Library |
|---|---|---|---|---|
| 2 | 1 | Homo sapiens HT-29 cell line | ENCBS605AAA | ENCLB951FSA |
| 1 | 1 | Homo sapiens HT-29 cell line | ENCBS604AAA | ENCLB133LNX |