Experiment summary for ENCSR935RNW
doi:10.17989/ENCSR935RNW
Summary
- Status
- released
- Assay
- PRO-cap
- Biosample summary
- Homo sapiens Calu3
- Biosample Type
- cell line
- Replication type
- isogenic
- Description
- A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in CALU3.
- Nucleic acid type
- RNA
- Average fragment size
- 34
- Size selection method
- Streptavidin magnetic beads
- Library construction method
- capped RNA enrichment
- Strand specificity
- Strand-specific (reverse)
- Spike-ins datasets
- ENCSR512THX
- Platform
- Illumina HiSeq X Ten
Attribution
ENCODE4 project
- Lab
- Haiyuan Yu, Cornell
- Award
- UM1HG009393 (John Lis, Cornell)
- Project
- ENCODE
- External resources
- Aliases
- haiyuan-yu:procap-experiment-ljungman-CALU3
- Date submitted
- January 31, 2022
- Date released
- July 7, 2022
- Annotation (BPNet-model)
- Submitter comment
- Experiment performed and analyzed by Sagar R. Shah, Alden Leung, and Mauricio Paramo
- Tags
Isogenic replicates
Isogenic replicate | Technical replicate | Summary | Biosample | Library |
|---|---|---|---|---|
| 1 | 1 | Homo sapiens Calu3 cell line | ENCBS974LON | ENCLB785FAS |
| 2 | 1 | Homo sapiens Calu3 cell line | ENCBS842EEJ | ENCLB715UPC |