Experiment summary for ENCSR923WGJ
doi:10.17989/ENCSR923WGJ
Summary
- Status
- released
- Assay
- ATAC-seq
- Biosample summary
- Homo sapiens foreskin keratinocyte male newborn (2-4 days) treated with 1.2 mM calcium for 4 days
- Biosample Type
- primary cell
- Replication type
- anisogenic
- Description
- ATAC-seq on primary keratinocytes in day 4.5 of differentiation
- Treatments
- 1.2 mM calcium (CHEBI:86158) for 4 days
- Nucleic acid type
- DNA
- RNA integrity number
- 9 [1-4]7.8 [2-2]7.8 [2-3]9 [1-1]7.8 [2-1]7.8 [2-4]9 [1-2]9 [1-3]7.8 [2-5]7.8 [2-6]7.8 [2-7]
- Platform
- Illumina HiSeq 4000
Attribution
Genomics of Gene Regulation Project
- Lab
- Will Greenleaf, Stanford
- Award
- U01HG007919 (Michael Snyder, Stanford)
- Project
- GGR
- External resources
- Aliases
- michael-snyder:ggr-skin-atacseq-day45
- Date submitted
- January 27, 2017
- Date released
- October 10, 2017
- Treatment Time Series
- ENCSR968JDE
- Annotation (gkmsvm-model)
Anisogenic replicates
Anisogenic replicate | Technical replicate | Summary | Biosample | Library |
|---|---|---|---|---|
| 1 | 4 | Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium for 4 days | ENCBS473PMP | ENCLB034CND |
| 2 | 2 | Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium for 4 days | ENCBS623QHX | ENCLB990XWX |
| 2 | 3 | Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium for 4 days | ENCBS623QHX | ENCLB526RLC |
| 1 | 1 | Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium for 4 days | ENCBS473PMP | ENCLB633BPS |
| 2 | 1 | Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium for 4 days | ENCBS623QHX | ENCLB987CDQ |
| 2 | 4 | Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium for 4 days | ENCBS623QHX | ENCLB892XGI |
| 1 | 2 | Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium for 4 days | ENCBS473PMP | ENCLB889CVO |
| 1 | 3 | Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium for 4 days | ENCBS473PMP | ENCLB097FAS |
| 2 | 5 | Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium for 4 days | ENCBS623QHX | ENCLB936EWE |
| 2 | 6 | Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium for 4 days | ENCBS623QHX | ENCLB628QOF |
| 2 | 7 | Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium for 4 days | ENCBS623QHX | ENCLB123VPU |