Experiment summary for ENCSR906HLA
doi:10.17989/ENCSR906HLA
Summary
- Status
- released
- Assay
- whole-genome shotgun bisulfite sequencing (WGBS)
- Biosample summary
- Mus musculus strain B6NCrl kidney tissue embryo (15.5 days)
- Biosample Type
- tissue
- Replication type
- isogenic
- Description
- Whole genome bisulfite-seq on embryonic 15.5 day mouse kidney
- Nucleic acid type
- DNA
- Size range
- 180-500
- Lysis method
- QIAGEN DNeasy Blood & Tissue Kit
- Fragmentation methods
- shearing (Covaris S2)
- Size selection method
- Sera-mag SpeedBeads
- Platform
- Illumina HiSeq 2500
Attribution
ENCODE3 project
- Lab
- Joe Ecker, Salk
- Award
- U54HG006997 (Bing Ren, UCSD)
- Project
- ENCODE
- External resources
- Aliases
- joe-ecker:E15_5_KD
- Date submitted
- April 28, 2015
- Date released
- June 23, 2015
- Organism Development Series
- ENCSR790SUM
- Reference Epigenome
- ENCSR189YPN
- Submitter comment
- Fastq files ENCFF394LLJ, ENCFF408JLR, ENCFF875CTN, and ENCFF876OZW contain reads of mixed lengths. Read lengths followed by respective number of reads: ENCFF394LLJ (108, 220775152), (132, 157629108), (145, 193234454); ENCFF408JLR (117, 194316753), (132, 196465067), (145, 186392085); ENCFF875CTN (117, 198620163), (132, 196816794); and ENCFF876OZW (125, 197981971), (130, 398167928).
- Tags
Isogenic replicates
Isogenic replicate | Technical replicate | Summary | Biosample | Library |
|---|---|---|---|---|
| 1 | 2 | Mus musculus strain B6NCrl mixed sex embryo (15.5 days) kidney tissue | ENCBS899UOK | ENCLB271PZE |
| 2 | 1 | Mus musculus strain B6NCrl mixed sex embryo (15.5 days) kidney tissue | ENCBS924ZKF | ENCLB813HQZ |
| 1 | 1 | Mus musculus strain B6NCrl mixed sex embryo (15.5 days) kidney tissue | ENCBS899UOK | ENCLB452ZCL |
| 2 | 2 | Mus musculus strain B6NCrl mixed sex embryo (15.5 days) kidney tissue | ENCBS924ZKF | ENCLB317DHZ |