Experiment summary for ENCSR885JFC
doi:10.17989/ENCSR885JFC
Summary
- Status
- released
- Assay
- RNA-seq (total RNA-seq)
- Target
- ttx-3
- Biosample summary
- Caenorhabditis elegans strain YL627 (ttx-3(tm268)X) whole organism 680 minutes post synchronization using egg bleaching genetically modified (mutagenesis) using mutagen treatment targeting C. elegans ttx-3
- Biosample Type
- whole organisms
- Replication type
- unreplicated
- Nucleic acid type
- RNA
- Depleted in
- rRNA
- Size range
- 350-600
- Extraction method
- Trizol
- Fragmentation methods
- shearing (Covaris generic)
- Strand specificity
- unstranded
- Platform
- Illumina NextSeq 500
Attribution
modERN project
- Lab
- Robert Waterston, UW
- Award
- U41HG007355 (Robert Waterston, UW)
- Project
- modERN
- Aliases
- robert-waterston:experiment_tm268_680_1
- Date submitted
- December 22, 2017
- Date released
- March 22, 2019
- Organism Development Series
- ENCSR749PKY
- Submitter comment
- Analysis of this data is in progress
Isogenic replicates
Isogenic replicate | Technical replicate | Summary | Biosample | Modifications | Library |
|---|---|---|---|---|---|
| 1 | 1 | Caenorhabditis elegans strain YL627 (ttx-3(tm268)X) 680 minutes post synchronization using egg bleaching whole organism genetically modified (mutagenesis) using mutagen treatment targeting C. elegans ttx-3 | ENCBS021YOK | ENCGM490BOC | ENCLB149XZV |