Experiment summary for ENCSR880RBB
doi:10.17989/ENCSR880RBB
Summary
- Status
- revoked
- Assay
- ChIP-seq (TF ChIP-seq)
- Target
- pop-1
- Biosample summary
- Caenorhabditis elegans strain OP560 (unc-119(tm4063) III; wgIs560) whole organism early embryo 2.5 hours post synchronization using egg bleaching genetically modified (insertion) using bombardment targeting C. elegans pop-1
- Biosample Type
- whole organisms
- Replication type
- isogenic
- Description
- ChIP-seq of transgenic worms expressing POP-1-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
- Nucleic acid type
- DNA
- Fragmentation methods
- sonication (generic microtip)
- Size selection method
- SPRI beads
- Controls
Attribution
modERN project
- Lab
- Valerie Reinke, Yale
- Award
- U41HG007355 (Robert Waterston, UW)
- Project
- modERN
- Aliases
- kevin-white:POP-1-OP560-EE
- Date submitted
- October 4, 2016
- Date released
- October 27, 2016
- Submitter comment
- The dataset was revoked because the lab indicated that the strain was found not to rescue mutants
- Factorbook
Encyclopedia Integration
Isogenic replicates
Isogenic replicate | Technical replicate | Summary | Biosample | Modifications | Antibody | Library |
|---|---|---|---|---|---|---|
| 2 | 1 | Caenorhabditis elegans strain OP560 (unc-119(tm4063) III; wgIs560) mixed sex early embryo 2.5 hours post synchronization using egg bleaching whole organism genetically modified (insertion) using bombardment targeting C. elegans pop-1 | ENCBS449IVX | ENCGM003OCR | ENCAB728YTO | ENCLB166OLT |
| 1 | 1 | Caenorhabditis elegans strain OP560 (unc-119(tm4063) III; wgIs560) mixed sex early embryo 2.5 hours post synchronization using egg bleaching whole organism genetically modified (insertion) using bombardment targeting C. elegans pop-1 | ENCBS263WKK | ENCGM003OCR | ENCAB728YTO | ENCLB235MRW |