Experiment summary for ENCSR875XJL
doi:10.17989/ENCSR875XJL
Summary
- Status
- released
- Assay
- ChIP-seq (TF ChIP-seq)
- Target
- athp-1
- Biosample summary
- Caenorhabditis elegans strain OP685 (unc-119(tm4063) III; wgIs685) whole organism young adult 64 hours post synchronization at L1 larva starved after bleaching stage genetically modified (insertion) using bombardment targeting C. elegans athp-1
- Biosample Type
- whole organisms
- Replication type
- isogenic
- Description
- ChIP-seq of transgenic worms expressing ATHP-1-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
- Nucleic acid type
- DNA
- Fragmentation methods
- sonication (generic microtip)
- Size selection method
- SPRI beads
- Platform
- Illumina HiSeq 4000
- Controls
Attribution
modERN project
- Lab
- Valerie Reinke, Yale
- Award
- U41HG007355 (Robert Waterston, UW)
- Project
- modERN
- External resources
- Aliases
- kevin-white:ATHP-1-OP685-yAd
- Date submitted
- October 5, 2017
- Date released
- November 6, 2017
- Factorbook
Encyclopedia Integration
Isogenic replicates
Isogenic replicate | Technical replicate | Summary | Biosample | Modifications | Antibody | Library |
|---|---|---|---|---|---|---|
| 2 | 1 | Caenorhabditis elegans strain OP685 (unc-119(tm4063) III; wgIs685) mixed sex young adult 64 hours post synchronization at L1 larva starved after bleaching stage whole organism genetically modified (insertion) using bombardment targeting C. elegans athp-1 | ENCBS271CPR | ENCGM381EXN | ENCAB728YTO | ENCLB121MXQ |
| 1 | 1 | Caenorhabditis elegans strain OP685 (unc-119(tm4063) III; wgIs685) mixed sex young adult 64 hours post synchronization at L1 larva starved after bleaching stage whole organism genetically modified (insertion) using bombardment targeting C. elegans athp-1 | ENCBS241THI | ENCGM381EXN | ENCAB728YTO | ENCLB991ZBY |