Experiment summary for ENCSR872HBZ

doi:10.17989/ENCSR872HBZ

Summary

Status
released
Assay
ChIP-seq (TF ChIP-seq)
Biosample summary
Caenorhabditis elegans strain OP608 (unc-119(tm4063); wgIs608 [Y55F3AM.14::TY::EGFP::3xFLAG(p_wTRG5_insertion_c_0075_1C04) + unc-119(+)]) whole organism L2 larva (42 hours) at L1 larva starved after bleaching stage genetically modified (insertion) using bombardment targeting C. elegans Y55F3AM.14
Biosample Type
whole organisms
Replication type
isogenic
Description
ChIP-seq on transgenic worms expressing Y55F3AM.14-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
Nucleic acid type
DNA
Size range
200-800
Fragmentation methods
sonication (Bioruptor generic)
Size selection method
SPRI beads
Controls

Attribution

modERN project
Lab
Kevin White, UChicago
Award
U41HG007355 (Robert Waterston, UW)
Project
modERN
External resources
Aliases
kevin-white:Y55F3AM.14_OP608_L2
Date submitted
February 26, 2018
Date released
March 1, 2018

Isogenic replicates

Isogenic replicate
Technical replicate
Summary
Biosample
Modifications
Antibody
Library
11Caenorhabditis elegans strain OP608 (unc-119(tm4063); wgIs608 [Y55F3AM.14::TY::EGFP::3xFLAG(p_wTRG5_insertion_c_0075_1C04) + unc-119(+)]) mixed sex L2 larva (42 hours) at L1 larva starved after bleaching stage whole organism genetically modified (insertion) using bombardment targeting C. elegans Y55F3AM.14ENCBS346BHPENCGM474AQOENCAB728YTOENCLB546MRD
21Caenorhabditis elegans strain OP608 (unc-119(tm4063); wgIs608 [Y55F3AM.14::TY::EGFP::3xFLAG(p_wTRG5_insertion_c_0075_1C04) + unc-119(+)]) mixed sex L2 larva (42 hours) at L1 larva starved after bleaching stage whole organism genetically modified (insertion) using bombardment targeting C. elegans Y55F3AM.14ENCBS815YZCENCGM474AQOENCAB728YTOENCLB364IAD