Experiment summary for ENCSR867ITQ
doi:10.17989/ENCSR867ITQ
Summary
- Status
- released
- Assay
- DNase-seq
- Biosample summary
- Homo sapiens HCT116 genetically modified (insertion) using CRISPR inserting O. sativa LOC4335696, (insertion) using CRISPR targeting H. sapiens CDK7 treated with 1 μM 5-Phenyl-1H-indole-3-acetic acid for 6 hours
- Biosample Type
- cell line
- Replication type
- unreplicated
- Treatments
- 1 μM 5-Phenyl-1H-indole-3-acetic acid for 6 hours
- Nucleic acid type
- DNA
- Platform
- Illumina NovaSeq 6000
Attribution
ENCODE4 project
- Lab
- John Stamatoyannopoulos, UW
- Award
- UM1HG009444 (John Stamatoyannopoulos, UW)
- Project
- ENCODE
- External resources
- Date released
- April 8, 2022
- Gene Silencing Series
- ENCSR018PVZ
Isogenic replicates
Isogenic replicate | Technical replicate | Summary | Biosample | Modifications | Library |
---|---|---|---|---|---|
1 | 1 | Homo sapiens HCT116 cell line genetically modified (insertion) using CRISPR inserting O. sativa LOC4335696, genetically modified (insertion) using CRISPR targeting H. sapiens CDK7 treated with 1 μM 5-Phenyl-1H-indole-3-acetic acid for 6 hours | ENCBS474PRW | ENCGM628AIR, ENCGM858RBU | ENCLB819CDY |
1 | 2 | Homo sapiens HCT116 cell line genetically modified (insertion) using CRISPR inserting O. sativa LOC4335696, genetically modified (insertion) using CRISPR targeting H. sapiens CDK7 treated with 1 μM 5-Phenyl-1H-indole-3-acetic acid for 6 hours | ENCBS474PRW | ENCGM628AIR, ENCGM858RBU | ENCLB937RRX |