Experiment summary for ENCSR842QTB
doi:10.17989/ENCSR842QTB
Summary
- Status
- released
- Assay
- whole-genome shotgun bisulfite sequencing (WGBS)
- Biosample summary
- Mus musculus strain B6NCrl intestine tissue embryo (15.5 days)
- Biosample Type
- tissue
- Replication type
- isogenic
- Description
- Whole genome bisulfite-seq on embryonic 15.5 day mouse intestine
- Nucleic acid type
- DNA
- Size range
- 180-500
- Lysis method
- QIAGEN DNeasy Blood & Tissue Kit
- Fragmentation methods
- shearing (Covaris S2)
- Size selection method
- Sera-mag SpeedBeads
- Platform
- Illumina HiSeq 2500
Attribution
ENCODE3 project
- Lab
- Joe Ecker, Salk
- Award
- U54HG006997 (Bing Ren, UCSD)
- Project
- ENCODE
- External resources
- Aliases
- joe-ecker:E15_5_IT
- Date submitted
- April 28, 2015
- Date released
- June 23, 2015
- Reference Epigenome
- ENCSR693OUQ
- Organism Development Series
- ENCSR547VJH
- Submitter comment
- Fastq files ENCFF605RIO, ENCFF825YSY, ENCFF280FQZ, and ENCFF356PAF contain reads of mixed lengths. Read lengths followed by respective number of reads: ENCFF605RIO (117, 150029473), (130, 206709550), (133, 214248802); ENCFF825YSY (117, 152633040), (130, 203153959), (133, 220372898); ENCFF280FQZ (117, 154963896), (133, 217652888); and ENCFF356PAF (130, 195567362), (133, 404023569).
- Tags
Isogenic replicates
Isogenic replicate | Technical replicate | Summary | Biosample | Library |
|---|---|---|---|---|
| 2 | 2 | Mus musculus strain B6NCrl mixed sex embryo (15.5 days) intestine tissue | ENCBS836WEU | ENCLB401KMA |
| 2 | 1 | Mus musculus strain B6NCrl mixed sex embryo (15.5 days) intestine tissue | ENCBS836WEU | ENCLB508EOJ |
| 1 | 1 | Mus musculus strain B6NCrl mixed sex embryo (15.5 days) intestine tissue | ENCBS401LLS | ENCLB694VKM |
| 1 | 2 | Mus musculus strain B6NCrl mixed sex embryo (15.5 days) intestine tissue | ENCBS401LLS | ENCLB449NKJ |