Experiment summary for ENCSR798IJQ
doi:10.17989/ENCSR798IJQ
Summary
- Status
- released
- Assay
- ATAC-seq
- Biosample summary
- Homo sapiens foreskin keratinocyte male newborn (2-4 days) treated with 1.2 mM calcium for 5.5 days
- Biosample Type
- primary cell
- Replication type
- anisogenic
- Description
- ATAC-seq on primary keratinocytes in day 6.0 of differentiation
- Treatments
- 1.2 mM calcium (CHEBI:86158) for 5.5 days
- Nucleic acid type
- DNA
- RNA integrity number
- 8.7 [1-4]6.8 [2-1]8.7 [1-2]8.7 [1-5]6.8 [2-2]6.8 [2-3]6.8 [2-4]6.8 [2-5]8.7 [1-3]8.7 [1-1]
- Platform
- Illumina HiSeq 4000
Attribution
Genomics of Gene Regulation Project
- Lab
- Will Greenleaf, Stanford
- Award
- U01HG007919 (Michael Snyder, Stanford)
- Project
- GGR
- External resources
- Aliases
- michael-snyder:ggr-skin-atacseq-day60
- Date submitted
- January 27, 2017
- Date released
- October 10, 2017
- Treatment Time Series
- ENCSR968JDE
- Annotation (gkmsvm-model)
Anisogenic replicates
Anisogenic replicate | Technical replicate | Summary | Biosample | Library |
|---|---|---|---|---|
| 1 | 4 | Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium for 5.5 days | ENCBS389AUD | ENCLB517XIL |
| 2 | 1 | Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium for 5.5 days | ENCBS135YLX | ENCLB674WWG |
| 1 | 2 | Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium for 5.5 days | ENCBS389AUD | ENCLB418FDD |
| 1 | 5 | Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium for 5.5 days | ENCBS389AUD | ENCLB112FTD |
| 2 | 2 | Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium for 5.5 days | ENCBS135YLX | ENCLB190HQK |
| 2 | 3 | Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium for 5.5 days | ENCBS135YLX | ENCLB891CCF |
| 2 | 4 | Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium for 5.5 days | ENCBS135YLX | ENCLB981GVD |
| 2 | 5 | Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium for 5.5 days | ENCBS135YLX | ENCLB189VFV |
| 1 | 3 | Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium for 5.5 days | ENCBS389AUD | ENCLB120SNK |
| 1 | 1 | Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium for 5.5 days | ENCBS389AUD | ENCLB751PIE |