Experiment summary for ENCSR791IKU

Summary

Status
released
Assay
ChIP-seq
Biosample summary
Caenorhabditis elegans strain YL489 (unc-119(ed3) III; vrIs104 [pPIE-1::AMA-1:GFP:FLAG::PUF-5 3'UTR, unc-119 (+)]) whole organism young adult genetically modified using bombardment
Biosample Type
whole organisms
Replication type
isogenic
Description
ChIP-seq against AMA-1 in YA worms.
Nucleic acid type
DNA
Fragmentation method
sonication (generic microtip)
Strand specificity
Non-strand-specific
Controls

Attribution

modENCODE Project
Lab
Michael Snyder, Stanford
Award
U01HG004267 (Michael Snyder, Stanford)
Project
modENCODE
Aliases
modencode:AMA-1_YL489
Date submitted
January 9, 2018
Date released
January 22, 2018

Isogenic replicates

Isogenic replicateTechnical replicateSummaryBiosampleModificationsAntibodyLibrary
11strain YL489 (unc-119(ed3) III; vrIs104 [pPIE-1::AMA-1:GFP:FLAG::PUF-5 3'UTR, unc-119 (+)]) mixed sex young adult whole organism genetically modified (insertion) using bombardment targeting eGFP-ama-1ENCBS122EJJENCGM592XRDENCAB435FBQENCLB675YDR
21strain YL489 (unc-119(ed3) III; vrIs104 [pPIE-1::AMA-1:GFP:FLAG::PUF-5 3'UTR, unc-119 (+)]) mixed sex young adult whole organism genetically modified (insertion) using bombardment targeting eGFP-ama-1ENCBS355MYEENCGM592XRDENCAB435FBQENCLB215ZZR