Experiment summary for ENCSR734SOQ
doi:10.17989/ENCSR734SOQ
Summary
- Status
- archived
- Assay
- single-cell RNA sequencing assay (scRNA-seq)
- Control type
- control
- Biosample summary
- Mus musculus strain B6NCrl pyramidal neuron adult (8 months)
- Biosample Type
- primary cell
- Replication type
- unreplicated
- Description
- LC_805-819_C57Bl6_layer_V_pyramidal_neuron_pool-split
- Nucleic acid type
- RNA
- Library starting quantity
- 1cell-equivalent
- Size range
- >200
- Lysis method
- Clontech UltraLow for Illumina sequencing
- Fragmentation methods
- chemical (Nextera tagmentation)
- Size selection method
- SPRI beads
- Strand specificity
- unstranded
- Spike-ins datasets
- ENCSR013YHQ, ENCSR133ALU
- Platform
- Illumina HiSeq 2500
Attribution
ENCODE3 project
- Lab
- Barbara Wold, Caltech
- Award
- U54HG006998 (Richard Myers, HAIB)
- Project
- ENCODE
- External resources
- Date submitted
- June 26, 2015
- Date released
- October 13, 2015
- Submitter comment
- Estimates of technical measurement error from low input mass RNA-seq libraries.
Isogenic replicates
Isogenic replicate | Technical replicate | Summary | Biosample | Library |
|---|---|---|---|---|
| 1 | 1 | Mus musculus strain B6NCrl adult (8 months) pyramidal neuron primary cell | ENCBS622XGI | ENCLB774TWW |
| 1 | 5 | Mus musculus strain B6NCrl adult (8 months) pyramidal neuron primary cell | ENCBS499NNJ | ENCLB977FBH |
| 1 | 12 | Mus musculus strain B6NCrl adult (8 months) pyramidal neuron primary cell | ENCBS157VHS | ENCLB861EZL |
| 1 | 15 | Mus musculus strain B6NCrl adult (8 months) pyramidal neuron primary cell | ENCBS531TQU | ENCLB301VGJ |
| 1 | 4 | Mus musculus strain B6NCrl adult (8 months) pyramidal neuron primary cell | ENCBS910XAG | ENCLB231DLC |
| 1 | 14 | Mus musculus strain B6NCrl adult (8 months) pyramidal neuron primary cell | ENCBS794PQQ | ENCLB264HUG |
| 1 | 2 | Mus musculus strain B6NCrl adult (8 months) pyramidal neuron primary cell | ENCBS456CCE | ENCLB579FVG |
| 1 | 8 | Mus musculus strain B6NCrl adult (8 months) pyramidal neuron primary cell | ENCBS222YVM | ENCLB151YVV |
| 1 | 10 | Mus musculus strain B6NCrl adult (8 months) pyramidal neuron primary cell | ENCBS553FFB | ENCLB282TJI |
| 1 | 7 | Mus musculus strain B6NCrl adult (8 months) pyramidal neuron primary cell | ENCBS604AJJ | ENCLB376XWO |
| 1 | 9 | Mus musculus strain B6NCrl adult (8 months) pyramidal neuron primary cell | ENCBS562VHG | ENCLB679XGZ |
| 1 | 13 | Mus musculus strain B6NCrl adult (8 months) pyramidal neuron primary cell | ENCBS226LFK | ENCLB292TWB |
| 1 | 6 | Mus musculus strain B6NCrl adult (8 months) pyramidal neuron primary cell | ENCBS488VUW | ENCLB945FTP |
| 1 | 11 | Mus musculus strain B6NCrl adult (8 months) pyramidal neuron primary cell | ENCBS393OMB | ENCLB670TAW |
| 1 | 3 | Mus musculus strain B6NCrl adult (8 months) pyramidal neuron primary cell | ENCBS091SVT | ENCLB637WDO |