Experiment summary for ENCSR717OAA
doi:10.17989/ENCSR717OAA
Summary
- Status
- released
- Assay
- RAMPAGE
- Biosample summary
- Homo sapiens foreskin keratinocyte male newborn (2-4 days) treated with 1.2 mM calcium for 5 days
- Biosample Type
- primary cell
- Replication type
- anisogenic
- Description
- RAMPAGE on primary keratinocytes in day 5.5 of differentiation
- Treatments
- 1.2 mM calcium (CHEBI:86158) for 5 days
- Nucleic acid type
- RNA
- RNA integrity number
- 8.2 [2-1]8.8 [1-1]
- Size range
- 300-1000
- Extraction method
- Qiagen RNA extraction
- Strand specificity
- Strand-specific (forward)
- Platform
- Illumina HiSeq 2000
- Controls
Attribution
Genomics of Gene Regulation Project
- Lab
- Michael Snyder, Stanford
- Award
- U01HG007919 (Michael Snyder, Stanford)
- Project
- GGR
- External resources
- Aliases
- michael-snyder:ggr-skin-rampage-day55
- Date submitted
- December 9, 2016
- Date released
- October 10, 2017
- Treatment Time Series
- ENCSR230KWM
Anisogenic replicates
Anisogenic replicate | Technical replicate | Summary | Biosample | Library |
---|---|---|---|---|
2 | 1 | Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium for 5 days | ENCBS194HUS | ENCLB533DSW |
1 | 1 | Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium for 5 days | ENCBS797AGG | ENCLB433BEN |