Experiment summary for ENCSR587ASA
doi:10.17989/ENCSR587ASA
Summary
- Status
- released
- Assay
- whole-genome shotgun bisulfite sequencing (WGBS)
- Biosample summary
- Mus musculus strain B6NCrl embryonic facial prominence tissue embryo (13.5 days)
- Biosample Type
- tissue
- Replication type
- isogenic
- Description
- Whole genome bisulfite-seq on embryonic 13.5 day mouse embryonic facial prominence
- Nucleic acid type
- DNA
- Size range
- 180-500
- Lysis method
- QIAGEN DNeasy Blood & Tissue Kit
- Fragmentation methods
- shearing (Covaris S2)
- Size selection method
- Sera-mag SpeedBeads
- Platform
- Illumina HiSeq 2500
Attribution
ENCODE3 project
- Lab
- Joe Ecker, Salk
- Award
- U54HG006997 (Bing Ren, UCSD)
- Project
- ENCODE
- External resources
- Aliases
- joe-ecker:E13_5_CF
- Date submitted
- August 14, 2015
- Date released
- August 18, 2015
- Reference Epigenome
- ENCSR792SPH
- Organism Development Series
- ENCSR008CAN
- Submitter comment
- Fastq files ENCFF181EEC and ENCFF817KPX contain reads of mixed lengths. Read lengths followed by respective number of reads: ENCFF181EEC (113, 220656368), (130, 203270458); ENCFF817KPX (113, 220676710), (130, 420214980).
- Tags
Isogenic replicates
Isogenic replicate | Technical replicate | Summary | Biosample | Library |
|---|---|---|---|---|
| 1 | 1 | Mus musculus strain B6NCrl mixed sex embryo (13.5 days) embryonic facial prominence tissue | ENCBS764ZZN | ENCLB452KAH |
| 2 | 1 | Mus musculus strain B6NCrl mixed sex embryo (13.5 days) embryonic facial prominence tissue | ENCBS847MIW | ENCLB289VXJ |
| 2 | 2 | Mus musculus strain B6NCrl mixed sex embryo (13.5 days) embryonic facial prominence tissue | ENCBS847MIW | ENCLB334QNS |
| 1 | 2 | Mus musculus strain B6NCrl mixed sex embryo (13.5 days) embryonic facial prominence tissue | ENCBS764ZZN | ENCLB319LJN |